Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0023104

Physical Location & Seq

Genomic Coordinates Reverse (-)

157517 .. 158707

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgatatgggcacccacatccccttctccttctggttgcagaccggggatcgtgtcatggagctccaacagaagagcttcgtcgtttggaaccgaaattaggctaatttgttggttggaagaagtaatttgttatggtggaagcaggtatccacgtgttcctgggatttatagagatgaacaggttgaggaatggaagaaggtggtcgacaccattcacgccaaaggtgctattattttctgtcaactttggcatgtaggtcgtgcttctcatcaaggccttgctgtgattcagaggcttaataagcttcaatacaacgaaggctcaaagctcgcctatctccatgtgactcagcctcattttgctactcatggcttggccgagtttgatgaagacagagaagctcaatttatgagtactttgcgagaagcttatgaaggaacattcatggctagtggagggtttaatagagagttaggaaactgtggcatccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

165

Amino Acids

18.61

Weight (kDa)

7.0

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023104)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004359.1_g000039 Rmu_sc0012557.1_g000001 Rmu_sc0036395.1_g000001
rosa_rugosa	Rorug02G0045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	378
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	6 cut(s)	63, 77, 307, 331, 404, 431
AluI	AGCT	6 cut(s)	63, 77, 307, 331, 404, 431
Alw21I	GWGCWC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	277, 378
Asp700I	GAANNNNTTC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	162
BciVI	GTATCC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	45
BfaI	CTAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	45, 162
BmiI	GGNNCC	2 cut(s)	12, 91
BmrFI	CCNGG	2 cut(s)	45, 162
BpiI	GAAGAC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	44, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	44, 161
BseGI	GGATG	2 cut(s)	17, 489
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	493
BseSI	GKGCMC	1 cut(s)	13
BshFI	GGCC	2 cut(s)	279, 380
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	99
BsnI	GGCC	2 cut(s)	279, 380
Bsp1286I	GDGCHC	2 cut(s)	13, 65
Bsp143I	GATC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	279, 380
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	12, 91
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	44, 161
BssMI	GATC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	17, 489
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 304
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	43, 160
BstSLI	GKGCMC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	399
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	279, 380
BtsCI	GGATG	2 cut(s)	17, 489
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	5 cut(s)	57, 254, 344, 371, 448
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	63
Eco72I	CACGTG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	5 cut(s)	60, 257, 347, 374, 451
FatI	CATG	5 cut(s)	56, 253, 343, 370, 447
FblI	GTMKAC	1 cut(s)	207
FokI	GGATG	2 cut(s)	4, 476
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	279, 380
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	5 cut(s)	60, 257, 347, 374, 451
HincII	GTYRAC	2 cut(s)	208, 245
HindII	GTYRAC	2 cut(s)	208, 245
HindIII	AAGCTT	2 cut(s)	305, 429
HinfI	GANTC	2 cut(s)	289, 349
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	208, 245
Hpy188I	TCNGA	1 cut(s)	294
Hpy8I	GTNNAC	2 cut(s)	208, 245
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	5 cut(s)	33, 39, 193, 314, 431
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 304
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	5 cut(s)	60, 257, 347, 374, 451
Kzo9I	GATC	1 cut(s)	48
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	60, 68
LpnPI	CCDG	6 cut(s)	18, 57, 130, 147, 167, 174
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	4 cut(s)	84, 131, 208, 404
MhlI	GDGCHC	2 cut(s)	13, 65
MluCI	AATT	4 cut(s)	96, 105, 126, 407
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	90, 96
MnlI	CCTC	4 cut(s)	181, 288, 366, 452
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	2 cut(s)	300, 465
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	45, 162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	227, 304
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	5 cut(s)	60, 257, 347, 374, 451
NlaIV	GGNNCC	2 cut(s)	12, 91
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	343
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	12, 91
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	300, 465
Sau3AI	GATC	1 cut(s)	48
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	45, 162
SduI	GDGCHC	2 cut(s)	13, 65
Sse9I	AATT	4 cut(s)	96, 105, 126, 407
SseBI	AGGCCT	1 cut(s)	279
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	43, 160
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	207
TasI	AATT	4 cut(s)	96, 105, 126, 407
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	300, 465
Tru9I	TTAA	2 cut(s)	300, 465
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	4 cut(s)	192, 405, 436, 450
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	453
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.