Rmu_sc0036395.1_g000001

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036395.1
Physical Location & Seq
Forward (+)
124 .. 381
258 bp
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UTR
Exon/CDS
Intron
Rmu_sc0036395.1_g000001.1.cds

Sequence Viewer

Length: 258 bp
atgacgctacgtacggactccaacccgtttggcctaggccttggtgtgattcagaggcttaataagcttcaatacaacgaaggctcaaagctcgcctatctccatgtgactcagcctcattttgctactcatggcttggccgagtttgatgaagacagagaagctcaatttatgagtactttgcgagaagcttatgaaggaacattcatggctagtggagggtttaatagagagttaggaaactgtggcatccggtga

Protein Analysis

85

Amino Acids

9.53

Weight (kDa)

5.84

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0023104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 2 cut(s) 13, 178
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 4 cut(s) 67, 91, 164, 191
AluI AGCT 4 cut(s) 67, 91, 164, 191
AoxI GGCC 3 cut(s) 31, 37, 138
AspA2I CCTAGG 1 cut(s) 34
AvrII CCTAGG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 159
BfaI CTAG 2 cut(s) 35, 213
BlnI CCTAGG 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 34, 40
BsaWI WCCGGW 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 34, 40
BseGI GGATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 125
BshFI GGCC 3 cut(s) 33, 39, 140
BsiSI CCGG 1 cut(s) 253
BsiWI CGTACG 1 cut(s) 11
BsnI GGCC 3 cut(s) 33, 39, 140
BspANI GGCC 3 cut(s) 33, 39, 140
BspCNI CTCAG 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 34, 40
BssT1I CCWWGG 2 cut(s) 34, 40
Bst4CI ACNGT 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSNI TACGTA 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 3 cut(s) 33, 39, 140
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 93
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 12, 177
CviAII CATG 3 cut(s) 104, 131, 208
CviQI GTAC 2 cut(s) 12, 177
DdeI CTNAG 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 138
Eco105I TACGTA 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 34, 40
Eco147I AGGCCT 1 cut(s) 39
EcoT14I CCWWGG 2 cut(s) 34, 40
ErhI CCWWGG 2 cut(s) 34, 40
FaeI CATG 3 cut(s) 107, 134, 211
FaiI YATR 5 cut(s) 105, 132, 173, 195, 209
FatI CATG 3 cut(s) 103, 130, 207
FokI GGATG 1 cut(s) 236
FspBI CTAG 2 cut(s) 35, 213
HaeIII GGCC 3 cut(s) 33, 39, 140
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 107, 134, 211
HindIII AAGCTT 2 cut(s) 65, 189
HinfI GANTC 3 cut(s) 17, 49, 109
HpaII CCGG 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 74, 191
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 3 cut(s) 107, 134, 211
MaeI CTAG 2 cut(s) 35, 213
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 1 cut(s) 164
MluCI AATT 1 cut(s) 167
MlyI GAGTC 2 cut(s) 11, 103
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 48, 126, 212
MseI TTAA 2 cut(s) 60, 225
MspI CCGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 64
NlaIII CATG 3 cut(s) 107, 134, 211
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 106
PceI AGGCCT 1 cut(s) 39
PfeI GAWTC 1 cut(s) 49
Pfl23II CGTACG 1 cut(s) 11
PleI GAGTC 2 cut(s) 11, 103
PpsI GAGTC 2 cut(s) 11, 103
Ppu21I YACGTR 1 cut(s) 11
PspLI CGTACG 1 cut(s) 11
RsaI GTAC 2 cut(s) 13, 178
RsaNI GTAC 2 cut(s) 12, 177
SaqAI TTAA 2 cut(s) 60, 225
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 2 cut(s) 11, 103
SetI ASST 5 cut(s) 13, 69, 93, 166, 193
SnaBI TACGTA 1 cut(s) 11
Sse9I AATT 1 cut(s) 167
SseBI AGGCCT 1 cut(s) 39
SspMI CTAG 2 cut(s) 35, 213
StuI AGGCCT 1 cut(s) 39
StyI CCWWGG 2 cut(s) 34, 40
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 13
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 60, 225
Tru9I TTAA 2 cut(s) 60, 225
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 165, 196, 210
TspGWI ACGGA 1 cut(s) 29
XmaJI CCTAGG 1 cut(s) 34
XspI CTAG 2 cut(s) 35, 213
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.