Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012557.1

Orthogroup ID

OG0023104

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1774

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 574 bp

gtcaccggcggccagattccggccaacttttgcaggattccggtcaccggccgtcgcccacgggacttttaagaatacctcaccggaaagaccggggatcgtgtcatggagctccaacagaagagcttcgtcgtttggaaccgaaattaggctaatttgttggttggaagaagtaatttgttatggtggaagcaggtatccacgtgttcctgggatttatagagatgaacaggttgaggaatggaagaaggtggtcgacaccattcacgccaaaggtgctattattttctgtcaactttggcatctatcgatttgcatgacgctacgtacggactccaacccgtttggcctaggccttggtgtgattcagaggcttaataagcttcaatacaacgaaggctcaaagctcgcctatctccatgtgactcagcctcattttgctactcatggcttggccgagtttgatgaagacagagaagctcaatttatgagtactttgcgagaagcttatgaaggaacattcatggctagtggagggtttaatagagagttaggaaactgtggcatccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

190

Amino Acids

21.41

Weight (kDa)

8.64

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023104)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004359.1_g000039 Rmu_sc0012557.1_g000001 Rmu_sc0036395.1_g000001
rosa_rugosa	Rorug02G0045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	4 cut(s)	10, 21, 49, 454
AcvI	CACGTG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	329, 494
AfiI	CCNNNNNNNGG	3 cut(s)	19, 47, 148
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	6 cut(s)	112, 126, 383, 407, 480, 507
AluI	AGCT	6 cut(s)	112, 126, 383, 407, 480, 507
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	6 cut(s)	10, 21, 49, 347, 353, 454
Asp700I	GAANNNNTTC	1 cut(s)	125
AspA2I	CCTAGG	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	37, 73
AvrII	CCTAGG	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	114
BbrPI	CACGTG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	2 cut(s)	351, 529
BfuAI	ACCTGC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	10
BlnI	CCTAGG	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	11
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	2 cut(s)	94, 211
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	94, 211
BmsI	GCATC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	309
BsaAI	YACGTR	2 cut(s)	204, 327
BsaJI	CCNNGG	5 cut(s)	59, 93, 210, 350, 356
BsaWI	WCCGGW	3 cut(s)	40, 83, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 47, 148
Bse118I	RCCGGY	2 cut(s)	5, 47
BseBI	CCWGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	5 cut(s)	59, 93, 210, 350, 356
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	19, 47, 148
BseMII	CTCAG	1 cut(s)	441
BseX3I	CGGCCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	6 cut(s)	12, 23, 51, 349, 355, 456
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	7 cut(s)	6, 20, 41, 48, 84, 93, 569
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	3 cut(s)	19, 47, 148
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	6 cut(s)	12, 23, 51, 349, 355, 456
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	6 cut(s)	12, 23, 51, 349, 355, 456
BspCNI	CTCAG	1 cut(s)	440
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	116
BsrFI	RCCGGY	2 cut(s)	5, 47
BssAI	RCCGGY	2 cut(s)	5, 47
BssECI	CCNNGG	5 cut(s)	59, 93, 210, 350, 356
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	2 cut(s)	350, 356
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	116
BstBAI	YACGTR	2 cut(s)	204, 327
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	427
BstDSI	CCRYGG	1 cut(s)	59
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 380
BstNI	CCWGG	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	92, 209
BstSNI	TACGTA	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	475
BstZI	CGGCCG	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	6 cut(s)	12, 23, 51, 349, 355, 456
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	565
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	409
Cfr10I	RCCGGY	2 cut(s)	5, 47
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	328, 493
CviAII	CATG	5 cut(s)	106, 317, 420, 447, 524
CviQI	GTAC	2 cut(s)	328, 493
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	4 cut(s)	10, 21, 49, 454
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	49
Eco105I	TACGTA	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	350, 356
Eco147I	AGGCCT	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	112
Eco72I	CACGTG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	2 cut(s)	350, 356
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	350, 356
FaeI	CATG	5 cut(s)	109, 320, 423, 450, 527
FaiI	YATR	9 cut(s)	107, 184, 220, 318, 421, 448, 489, 511, 525
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	5 cut(s)	105, 316, 419, 446, 523
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	1 cut(s)	552
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	2 cut(s)	351, 529
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	6 cut(s)	12, 23, 51, 349, 355, 456
HapII	CCGG	7 cut(s)	6, 20, 41, 48, 84, 93, 569
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	5 cut(s)	109, 320, 423, 450, 527
HincII	GTYRAC	2 cut(s)	257, 294
HindII	GTYRAC	2 cut(s)	257, 294
HindIII	AAGCTT	2 cut(s)	381, 505
HinfI	GANTC	5 cut(s)	16, 37, 333, 365, 425
HpaII	CCGG	7 cut(s)	6, 20, 41, 48, 84, 93, 569
HphI	GGTGA	2 cut(s)	37, 73
Hpy166II	GTNNAC	2 cut(s)	257, 294
Hpy188I	TCNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	257, 294
Hpy99I	CGWCG	2 cut(s)	57, 134
HpyAV	CCTTC	3 cut(s)	242, 390, 507
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	2 cut(s)	203, 326
HpyCH4V	TGCA	2 cut(s)	33, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 380
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	2 cut(s)	203, 326
Hsp92II	CATG	5 cut(s)	109, 320, 423, 450, 527
Kzo9I	GATC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	109, 117
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	2 cut(s)	351, 529
MaeII	ACGT	2 cut(s)	203, 326
MaeIII	GTNAC	2 cut(s)	43, 422
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	133, 180, 257, 480
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	4 cut(s)	145, 154, 175, 483
MlyI	GAGTC	2 cut(s)	327, 419
MmeI	TCCRAC	3 cut(s)	139, 145, 361
MnlI	CCTC	5 cut(s)	89, 230, 364, 442, 528
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	3 cut(s)	70, 376, 541
MspI	CCGG	7 cut(s)	6, 20, 41, 48, 84, 93, 569
MspR9I	CCNGG	2 cut(s)	94, 211
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	276, 380
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	109, 320, 423, 450, 527
NlaIV	GGNNCC	1 cut(s)	140
NmeAIII	GCCGAG	1 cut(s)	482
NmuCI	GTSAC	2 cut(s)	43, 422
PceI	AGGCCT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	16, 37, 365
Pfl23II	CGTACG	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	2 cut(s)	327, 419
PmaCI	CACGTG	1 cut(s)	204
PmlI	CACGTG	1 cut(s)	204
PpsI	GAGTC	2 cut(s)	327, 419
Ppu21I	YACGTR	2 cut(s)	204, 327
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	209
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	329, 494
RsaNI	GTAC	2 cut(s)	328, 493
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	70, 376, 541
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	2 cut(s)	327, 419
ScrFI	CCNGG	2 cut(s)	94, 211
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	311
SgrAI	CRCCGGYG	1 cut(s)	5
SnaBI	TACGTA	1 cut(s)	327
Sse9I	AATT	4 cut(s)	145, 154, 175, 483
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	351, 529
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	92, 209
StyI	CCWWGG	2 cut(s)	350, 356
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	2 cut(s)	206, 329
TaqI	TCGA	2 cut(s)	256, 309
TasI	AATT	4 cut(s)	145, 154, 175, 483
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	16, 37, 365
Tru1I	TTAA	3 cut(s)	70, 376, 541
Tru9I	TTAA	3 cut(s)	70, 376, 541
TseFI	GTSAC	2 cut(s)	43, 422
Tsp45I	GTSAC	2 cut(s)	43, 422
TspDTI	ATGAA	4 cut(s)	241, 481, 512, 526
TspGWI	ACGGA	1 cut(s)	345
XmaJI	CCTAGG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	351, 529
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.