Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004417.1

Orthogroup ID

OG0025091

Physical Location & Seq

Genomic Coordinates Forward (+)

13639 .. 14121

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgaaacccatgactcatttcctctccctccttcttctcctactctgcctcctcgccaccatccacggcggagggcacgactaccaagacgcattgtcgaaatgcatactctttttcgagggccagaggtcgggggttctgcctcaggaccaacgccagtcgtggcgggctaattccgggttgagtgatggctggacttacaacactgacctcaccggcggctactacgacgcaggagacaacgtcaagttcgggttcccgatggccttcacgaccacaatgctggcgtggagtgtcatcgagtttggggactccatgcctcccaatgagcacaggaatgcgctggttgccctgcgttgggggacggattacctcctcaaaacggtgtcgcagcccaatcggattttcgtacaagtaagtttgtttatttattgggttgttgggtgtggttggtttttccgtttttgtgggtggcatagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

160

Amino Acids

18.19

Weight (kDa)

6.49

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	28 - 140	5.6e-43	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025091)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267761
rosa_multiflora	Rmu_sc0004417.1_g000003
rosa_samantha	Rh6DG142200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	69, 166, 219
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
AhdI	GACNNNNNGTC	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	231
AoxI	GGCC	2 cut(s)	121, 264
ApeKI	GCWGC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	121, 148
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	3 cut(s)	68, 182, 256
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	4 cut(s)	262, 296, 380, 414
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	2 cut(s)	220, 392
BlsI	GCNGC	2 cut(s)	221, 393
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	121, 148
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	64
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 228, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	157
Bse21I	CCTNAGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	41, 365
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	2 cut(s)	123, 266
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	177, 216
BslFI	GGGAC	2 cut(s)	323, 376
BslI	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	323, 376
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	123, 266
Bsp1286I	GDGCHC	2 cut(s)	78, 333
BspACI	CCGC	3 cut(s)	69, 166, 219
BspANI	GGCC	2 cut(s)	123, 266
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	168, 285
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	123, 266
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	168, 285
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	121, 148
CseI	GACGC	2 cut(s)	98, 239
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	2 cut(s)	10, 316
CviJI	RGCY	6 cut(s)	123, 170, 192, 222, 266, 394
CviKI_1	RGCY	6 cut(s)	123, 170, 192, 222, 266, 394
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	1 cut(s)	144
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	148
Eco81I	CCTNAGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	2 cut(s)	13, 319
FaiI	YATR	4 cut(s)	11, 107, 317, 477
FaqI	GGGAC	2 cut(s)	323, 376
FatI	CATG	2 cut(s)	9, 315
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	220, 392
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	220, 392
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	220, 392
HaeIII	GGCC	2 cut(s)	123, 266
HapII	CCGG	2 cut(s)	177, 216
HgaI	GACGC	2 cut(s)	98, 239
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	13, 319
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	13, 311
HpaII	CCGG	2 cut(s)	177, 216
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	3 cut(s)	146, 259, 271
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	41, 277
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	13, 319
HspAI	GCGC	1 cut(s)	341
Lsp1109I	GCAGC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	243
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	78, 333
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	2 cut(s)	7, 305
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	1 cut(s)	481
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	2 cut(s)	177, 216
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	178
NlaIII	CATG	2 cut(s)	13, 319
NlaIV	GGNNCC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	107
PctI	GAATGC	1 cut(s)	343
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	221, 393
PleI	GAGTC	2 cut(s)	7, 305
PpsI	GAGTC	2 cut(s)	7, 305
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	121, 148
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	2 cut(s)	220, 392
Sau96I	GGNCC	2 cut(s)	121, 148
SchI	GAGTC	2 cut(s)	7, 305
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	78, 333
SetI	ASST	4 cut(s)	131, 213, 246, 375
SgrAI	CRCCGGYG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	3 cut(s)	69, 166, 219
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	98, 117, 300
TasI	AATT	1 cut(s)	172
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	380, 449
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.