Rmu_sc0004464.1_g000003

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004464.1
OG0017100
Physical Location & Seq
Reverse (-)
11000 .. 12196
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1197 bp
atgagattgataatgaagcagcagccctgctatcggttattgggtgttcggttgaaaacaacctcatcacagtatgtagcatcaagatccagagatcccacgtttgagaaattaatggataagtacaagaaccttgtcaaagtcgttgcagtgcaagatctcatcctcgcaaaccccagtgaccccgcagtttccgttgattttctgtccaggctctcccaaaagctccatctcaaccgcggtgcagttgccttcctccgcaaataccctcatattttccacatttaccatgacccaacaaagggacagacacgatgcacattaactgatactgcttttcgaatttcagaagaagaagcagaggctattaatgcctcgttgccacttgttgttgatcgattggttcggcttctgtccatgtcgacttccaagatgttgccactgcgcgccatttttaaagtttgcagggaacttgggcttcctgatgattttgaggagtctgtaatatctaaaaactcccatctttttcaactttgtgatgctcatgaacccaacacccataacttgaaactggttggtgcaatttctgacaagtttgttgcagctgttgagaattggagggtagaggaatattgcaaagagggttgcagtgttgatagggctgaacttcagtttagttttaagcatggatatcctccagggatgaggttaagaaagaattttagagccaaggttaaagaatggcagaagttgccatacatcgggccatatgatgaggtcacagagaagaggttgtctaaagctggaatgatagttggggagaaacgagcagttgcaatagttcatgagttcttgaatctgacagttgagaggatggttgaagtggagaaaatcagtcatttcagaaaatggtttgggtttgatttgaatataagggatttgttcctggatcaccctgggatgttttatttgtctaccaagggaaagagacacactgtttttctgagagaagcttatgagagagggtgtttgattcacccaaattcggtttataatgcaaggagaaagctactggatcttgttgttttgggacgtcatgatatgtttactggtgacacaaagatgaggagtattgctaatagcaaggaggctgagtttctggagcagtacaatggagaaacctccgactctgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

398

Amino Acids

45.92

Weight (kDa)

9.19

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 31 - 365 8.9e-108 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06440
fragaria_vesca FvH4_3g11420 FvH4_3g11420 FvH4_3g11420
prunus_persica Prupe.4G102100_v2.0.a1
rosa_laevigata RLG00000032356
rosa_multiflora Rmu_sc0004464.1_g000003
rosa_rugosa Rorug05G0041900
rosa_samantha Rh5AG135200 Rh5BG133800 Rh5CG145600 Rh5DG135200
rosa_wichuraiana Rw5G011810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1053
AatII GACGTC 1 cut(s) 1096
AccI GTMKAC 2 cut(s) 422, 974
AccII CGCG 2 cut(s) 240, 447
AciI CCGC 4 cut(s) 186, 238, 240, 259
AclWI GGATC 4 cut(s) 81, 89, 957, 1083
AcsI RAATTY 3 cut(s) 342, 718, 1042
AcuI CTGAAG 1 cut(s) 653
AcyI GRCGYC 1 cut(s) 1093
AfaI GTAC 2 cut(s) 125, 1169
AfiI CCNNNNNNNGG 5 cut(s) 33, 301, 302, 761, 1045
AgsI TTSAA 6 cut(s) 55, 530, 568, 856, 881, 928
AjnI CCWGG 4 cut(s) 209, 697, 945, 955
AluBI AGCT 5 cut(s) 226, 605, 803, 1013, 1069
AluI AGCT 5 cut(s) 226, 605, 803, 1013, 1069
Alw26I GTCTC 1 cut(s) 982
AlwI GGATC 4 cut(s) 81, 89, 957, 1083
AoxI GGCC 1 cut(s) 764
ApeKI GCWGC 3 cut(s) 19, 22, 602
ApoI RAATTY 3 cut(s) 342, 718, 1042
AseI ATTAAT 2 cut(s) 113, 369
AspLEI GCGC 2 cut(s) 447, 449
AspS9I GGNCC 1 cut(s) 764
AsuHPI GGTGA 3 cut(s) 944, 1028, 1124
AsuII TTCGAA 1 cut(s) 340
BarI GAAGNNNNNNTAC 2 cut(s) 740, 772
BbvI GCAGC 3 cut(s) 31, 34, 614
BccI CCATC 3 cut(s) 237, 528, 868
BciT130I CCWGG 4 cut(s) 211, 699, 947, 957
BcoDI GTCTC 1 cut(s) 982
BglII AGATCT 1 cut(s) 157
BisI GCNGC 3 cut(s) 20, 23, 603
BlsI GCNGC 3 cut(s) 21, 24, 604
Bme1390I CCNGG 4 cut(s) 211, 699, 947, 957
BmgT120I GGNCC 1 cut(s) 764
BmrFI CCNGG 4 cut(s) 211, 699, 947, 957
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 3 cut(s) 89, 305, 529
BmuI ACTGGG 1 cut(s) 171
BpmI CTGGAG 2 cut(s) 681, 1181
Bpu14I TTCGAA 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 1093
BsaJI CCNNGG 6 cut(s) 238, 698, 729, 955, 956, 978
BsaXI ACNNNNNCTCC 2 cut(s) 1139, 1169
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 301, 302, 761, 1045
Bse1I ACTGG 4 cut(s) 177, 576, 1077, 1114
BseBI CCWGG 4 cut(s) 211, 699, 947, 957
BseCI ATCGAT 1 cut(s) 397
BseDI CCNNGG 6 cut(s) 238, 698, 729, 955, 956, 978
BseGI GGATG 4 cut(s) 162, 708, 879, 966
BseLI CCNNNNNNNGG 5 cut(s) 33, 301, 302, 761, 1045
BseMII CTCAG 2 cut(s) 995, 1143
BseNI ACTGG 4 cut(s) 177, 576, 1077, 1114
BsePI GCGCGC 1 cut(s) 445
BseRI GAGGAG 2 cut(s) 509, 1141
BseXI GCAGC 3 cut(s) 31, 34, 614
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 240, 447
BshFI GGCC 1 cut(s) 766
BshVI ATCGAT 1 cut(s) 397
BslFI GGGAC 2 cut(s) 318, 1104
BslI CCNNNNNNNGG 5 cut(s) 33, 301, 302, 761, 1045
BsmAI GTCTC 1 cut(s) 982
BsmFI GGGAC 2 cut(s) 318, 1104
BsnI GGCC 1 cut(s) 766
Bsp119I TTCGAA 1 cut(s) 340
Bsp143I GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
BspACI CCGC 4 cut(s) 186, 238, 240, 259
BspANI GGCC 1 cut(s) 766
BspCNI CTCAG 2 cut(s) 996, 1144
BspDI ATCGAT 1 cut(s) 397
BspFNI CGCG 2 cut(s) 240, 447
BspHI TCATGA 3 cut(s) 544, 844, 1096
BspPI GGATC 4 cut(s) 81, 89, 957, 1083
BspT104I TTCGAA 1 cut(s) 340
BsrI ACTGG 4 cut(s) 177, 576, 1077, 1114
BssECI CCNNGG 6 cut(s) 238, 698, 729, 955, 956, 978
BssHII GCGCGC 1 cut(s) 445
BssMI GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
BssNI GRCGYC 1 cut(s) 1093
BssT1I CCWWGG 2 cut(s) 729, 978
Bst2UI CCWGG 4 cut(s) 211, 699, 947, 957
Bst4CI ACNGT 3 cut(s) 72, 865, 997
Bst6I CTCTTC 1 cut(s) 782
BstACI GRCGYC 1 cut(s) 1093
BstAPI GCANNNNNTGC 1 cut(s) 751
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 2 cut(s) 1004, 1152
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 4 cut(s) 162, 708, 879, 966
BstFNI CGCG 2 cut(s) 240, 447
BstHHI GCGC 2 cut(s) 447, 449
BstKTI GATC 6 cut(s) 89, 97, 160, 397, 952, 1078
BstMAI GTCTC 1 cut(s) 982
BstMBI GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
BstMWI GCNNNNNNNGC 2 cut(s) 371, 751
BstNI CCWGG 4 cut(s) 211, 699, 947, 957
BstSCI CCNGG 4 cut(s) 209, 697, 945, 955
BstUI CGCG 2 cut(s) 240, 447
BstV1I GCAGC 3 cut(s) 31, 34, 614
BstX2I RGATCY 4 cut(s) 86, 94, 157, 1075
BstYI RGATCY 4 cut(s) 86, 94, 157, 1075
Bsu15I ATCGAT 1 cut(s) 397
BsuRI GGCC 1 cut(s) 766
BsuTUI ATCGAT 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 4 cut(s) 162, 708, 879, 966
BtsI GCAGTG 3 cut(s) 156, 440, 655
BtsIMutI CAGTG 5 cut(s) 156, 184, 440, 655, 993
Cac8I GCNNGC 1 cut(s) 447
CciI TCATGA 3 cut(s) 544, 844, 1096
CfoI GCGC 2 cut(s) 447, 449
Cfr13I GGNCC 1 cut(s) 764
Cfr42I CCGCGG 1 cut(s) 241
ClaI ATCGAT 1 cut(s) 397
Csp6I GTAC 2 cut(s) 124, 1168
CviAII CATG 6 cut(s) 290, 418, 545, 686, 845, 1097
CviQI GTAC 2 cut(s) 124, 1168
DdeI CTNAG 2 cut(s) 1004, 1152
DpnI GATC 6 cut(s) 88, 96, 159, 396, 951, 1077
DpnII GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
DraI TTTAAA 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
Eco130I CCWWGG 2 cut(s) 729, 978
Eco32I GATATC 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 653
EcoRII CCWGG 4 cut(s) 209, 697, 945, 955
EcoRV GATATC 1 cut(s) 692
EcoT14I CCWWGG 2 cut(s) 729, 978
ErhI CCWWGG 2 cut(s) 729, 978
FaeI CATG 6 cut(s) 293, 421, 548, 689, 848, 1100
FaqI GGGAC 2 cut(s) 318, 1104
FatI CATG 6 cut(s) 289, 417, 544, 685, 844, 1096
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 769
FblI GTMKAC 2 cut(s) 422, 974
Fnu4HI GCNGC 3 cut(s) 20, 23, 603
FokI GGATG 4 cut(s) 149, 715, 886, 973
Fsp4HI GCNGC 3 cut(s) 20, 23, 603
GlaI GCGC 2 cut(s) 446, 448
GluI GCNGC 3 cut(s) 20, 23, 603
GsuI CTGGAG 2 cut(s) 681, 1181
HaeIII GGCC 1 cut(s) 766
HhaI GCGC 2 cut(s) 447, 449
Hin1I GRCGYC 1 cut(s) 1093
Hin1II CATG 6 cut(s) 293, 421, 548, 689, 848, 1100
Hin6I GCGC 2 cut(s) 445, 447
HinP1I GCGC 2 cut(s) 445, 447
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 1011
HinfI GANTC 4 cut(s) 497, 856, 1033, 1187
HphI GGTGA 3 cut(s) 944, 1028, 1124
Hpy166II GTNNAC 3 cut(s) 423, 975, 1107
Hpy188I TCNGA 7 cut(s) 349, 589, 861, 905, 1005, 1186, 1192
Hpy188III TCNNGA 8 cut(s) 84, 90, 482, 545, 845, 853, 1097, 1160
Hpy8I GTNNAC 3 cut(s) 423, 975, 1107
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 3 cut(s) 72, 865, 997
HpyCH4IV ACGT 2 cut(s) 101, 1093
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 751
HpyF3I CTNAG 2 cut(s) 1004, 1152
HpySE526I ACGT 2 cut(s) 101, 1093
Hsp92I GRCGYC 1 cut(s) 1093
Hsp92II CATG 6 cut(s) 293, 421, 548, 689, 848, 1100
HspAI GCGC 2 cut(s) 445, 447
KspI CCGCGG 1 cut(s) 241
Kzo9I GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
LmnI GCTCC 2 cut(s) 231, 1162
Lsp1109I GCAGC 3 cut(s) 31, 34, 614
LweI GCATC 3 cut(s) 89, 305, 529
MaeII ACGT 2 cut(s) 101, 1093
MaeIII GTNAC 3 cut(s) 179, 778, 1112
MalI GATC 6 cut(s) 88, 96, 159, 396, 951, 1077
MboI GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
MboII GAAGA 3 cut(s) 362, 365, 799
MflI RGATCY 4 cut(s) 86, 94, 157, 1075
MluCI AATT 6 cut(s) 110, 342, 582, 613, 718, 1042
MlyI GAGTC 2 cut(s) 506, 1181
MseI TTAA 7 cut(s) 113, 323, 369, 456, 681, 710, 735
MslI CAYNNNNRTG 1 cut(s) 1121
MspA1I CMGCKG 2 cut(s) 240, 605
MspR9I CCNGG 4 cut(s) 211, 699, 947, 957
MvaI CCWGG 4 cut(s) 211, 699, 947, 957
MvnI CGCG 2 cut(s) 240, 447
MwoI GCNNNNNNNGC 2 cut(s) 371, 751
NdeI CATATG 1 cut(s) 769
NdeII GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
NlaIII CATG 6 cut(s) 293, 421, 548, 689, 848, 1100
NmuCI GTSAC 3 cut(s) 179, 778, 1112
NspV TTCGAA 1 cut(s) 340
PagI TCATGA 3 cut(s) 544, 844, 1096
PasI CCCWGGG 1 cut(s) 956
PauI GCGCGC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 856, 1033
PfoI TCCNGGA 1 cut(s) 945
PkrI GCNGC 3 cut(s) 21, 24, 604
PleI GAGTC 2 cut(s) 505, 1181
PpsI GAGTC 2 cut(s) 505, 1181
PshBI ATTAAT 2 cut(s) 113, 369
PsiI TTATAA 1 cut(s) 1053
Psp6I CCWGG 4 cut(s) 209, 697, 945, 955
PspGI CCWGG 4 cut(s) 209, 697, 945, 955
PspPI GGNCC 1 cut(s) 764
PsuI RGATCY 4 cut(s) 86, 94, 157, 1075
PteI GCGCGC 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 2 cut(s) 125, 1169
RsaNI GTAC 2 cut(s) 124, 1168
RseI CAYNNNNRTG 1 cut(s) 1121
SacII CCGCGG 1 cut(s) 241
SalI GTCGAC 1 cut(s) 421
SaqAI TTAA 7 cut(s) 113, 323, 369, 456, 681, 710, 735
SatI GCNGC 3 cut(s) 20, 23, 603
Sau3AI GATC 6 cut(s) 86, 94, 157, 394, 949, 1075
Sau96I GGNCC 1 cut(s) 764
SchI GAGTC 2 cut(s) 506, 1181
ScrFI CCNGG 4 cut(s) 211, 699, 947, 957
SfaNI GCATC 3 cut(s) 89, 305, 529
Sfr303I CCGCGG 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 340
SgrBI CCGCGG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 1121
Sse9I AATT 6 cut(s) 110, 342, 582, 613, 718, 1042
SsiI CCGC 4 cut(s) 186, 238, 240, 259
SspI AATATT 1 cut(s) 632
StyD4I CCNGG 4 cut(s) 209, 697, 945, 955
StyI CCWWGG 2 cut(s) 729, 978
TaaI ACNGT 3 cut(s) 72, 865, 997
TaiI ACGT 2 cut(s) 104, 1096
TaqI TCGA 3 cut(s) 340, 397, 422
TasI AATT 6 cut(s) 110, 342, 582, 613, 718, 1042
TatI WGTACW 2 cut(s) 123, 1167
TfiI GAWTC 2 cut(s) 856, 1033
Tru1I TTAA 7 cut(s) 113, 323, 369, 456, 681, 710, 735
Tru9I TTAA 7 cut(s) 113, 323, 369, 456, 681, 710, 735
TscAI CASTG 5 cut(s) 156, 184, 447, 655, 1000
TseFI GTSAC 3 cut(s) 179, 778, 1112
TseI GCWGC 3 cut(s) 19, 22, 602
Tsp45I GTSAC 3 cut(s) 179, 778, 1112
TspDTI ATGAA 3 cut(s) 29, 561, 833
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 5 cut(s) 156, 184, 447, 655, 1000
VspI ATTAAT 2 cut(s) 113, 369
XapI RAATTY 3 cut(s) 342, 718, 1042
XmiI GTMKAC 2 cut(s) 422, 974
ZraI GACGTC 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.