Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004502.1

Orthogroup ID

OG0022201

Physical Location & Seq

Genomic Coordinates Reverse (-)

16515 .. 17773

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggagaacttttatgttgggaattttgtcaaattccgactttgggccggcggcgacgccgccactaaggacctgtggtggtccaatcagatcttagcagtcgtcgacgtccttctagcctccgataagcgcgtaaacaaccaccacgactggtactccattctccaggtggatcaccgatccgacgaccacgatctgatcaagagatcgtatcgacggctggtgttgatcctccaaccagacaagaacaaatactccttcgccgagcacgccttcaagctcgtcgccgatgcatgggccgttctctccgacccgtccaagaagccggtcttcgacaccgagctgggcctctacagcccactcgatctcaccgccgccgcagcagcctccaatccgaacaagcttccggtgcggcaggggcagaatgctcgaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

145

Amino Acids

16.52

Weight (kDa)

7.99

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	50 - 112	6.9e-16	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34240
rosa_multiflora	Rmu_sc0004502.1_g000007
rosa_samantha	Rh4AG208000 Rh6AG416600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	132
AciI	CCGC	6 cut(s)	51, 60, 372, 375, 378, 412
AclWI	GGATC	3 cut(s)	174, 180, 223
AcsI	RAATTY	2 cut(s)	22, 32
AcyI	GRCGYC	2 cut(s)	57, 108
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	43, 294
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	165
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	280, 343, 403
AluI	AGCT	3 cut(s)	280, 343, 403
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	3 cut(s)	174, 180, 223
AoxI	GGCC	3 cut(s)	45, 297, 346
ApeKI	GCWGC	2 cut(s)	380, 383
ApoI	RAATTY	2 cut(s)	22, 32
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	5 cut(s)	45, 70, 81, 297, 346
AsuHPI	GGTGA	2 cut(s)	167, 361
AvaII	GGWCC	2 cut(s)	70, 81
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	392, 395
BceAI	ACGGC	2 cut(s)	233, 284
BcgI	CGANNNNNNTGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	198
BfaI	CTAG	2 cut(s)	116, 436
BfmI	CTRYAG	1 cut(s)	352
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	7 cut(s)	52, 60, 375, 378, 381, 384, 413
BlsI	GCNGC	7 cut(s)	53, 61, 376, 379, 382, 385, 414
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	70, 81
BmgT120I	GGNCC	5 cut(s)	45, 70, 81, 297, 346
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	149
BsaHI	GRCGYC	2 cut(s)	57, 108
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 294
Bse118I	RCCGGY	2 cut(s)	47, 325
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	43, 294
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	392, 395
BseYI	CCCAGC	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	47, 299, 348
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	48, 326, 407
BslI	CCNNNNNNNGG	2 cut(s)	43, 294
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	47, 299, 348
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
BspACI	CCGC	6 cut(s)	51, 60, 372, 375, 378, 412
BspANI	GGCC	3 cut(s)	47, 299, 348
BspFNI	CGCG	1 cut(s)	132
BspPI	GGATC	3 cut(s)	174, 180, 223
BsrFI	RCCGGY	2 cut(s)	47, 325
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	47, 325
BssMI	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
BssNI	GRCGYC	2 cut(s)	57, 108
Bst2UI	CCWGG	1 cut(s)	167
BstACI	GRCGYC	2 cut(s)	57, 108
BstC8I	GCNNGC	2 cut(s)	49, 270
BstDEI	CTNAG	2 cut(s)	66, 94
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	8 cut(s)	93, 175, 182, 196, 201, 209, 231, 367
BstMBI	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
BstMWI	GCNNNNNNNGC	6 cut(s)	269, 354, 380, 383, 409, 418
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	392, 395
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	47, 299, 348
Cac8I	GCNNGC	2 cut(s)	49, 270
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	2 cut(s)	47, 325
Cfr13I	GGNCC	5 cut(s)	45, 70, 81, 297, 346
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	294
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	66, 94
DpnI	GATC	8 cut(s)	92, 174, 181, 195, 200, 208, 230, 366
DpnII	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
Eco47I	GGWCC	2 cut(s)	70, 81
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	295
FaeI	CATG	1 cut(s)	297
FaiI	YATR	2 cut(s)	15, 295
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	7 cut(s)	52, 60, 375, 378, 381, 384, 413
Fsp4HI	GCNGC	7 cut(s)	52, 60, 375, 378, 381, 384, 413
FspBI	CTAG	2 cut(s)	116, 436
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	7 cut(s)	52, 60, 375, 378, 381, 384, 413
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	47, 299, 348
HapII	CCGG	3 cut(s)	48, 326, 407
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	2 cut(s)	57, 108
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	401
HpaII	CCGG	3 cut(s)	48, 326, 407
HphI	GGTGA	2 cut(s)	167, 361
Hpy166II	GTNNAC	2 cut(s)	106, 136
Hpy188I	TCNGA	7 cut(s)	38, 90, 124, 184, 198, 310, 396
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	106, 136
Hpy99I	CGWCG	6 cut(s)	59, 107, 110, 188, 219, 287
HpyAV	CCTTC	3 cut(s)	122, 268, 283
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	6 cut(s)	269, 354, 380, 383, 409, 418
HpyF3I	CTNAG	2 cut(s)	66, 94
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	2 cut(s)	57, 108
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
Lsp1109I	GCAGC	2 cut(s)	392, 395
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	116, 436
MaeII	ACGT	1 cut(s)	108
MalI	GATC	8 cut(s)	92, 174, 181, 195, 200, 208, 230, 366
MboI	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	22, 32
MmeI	TCCRAC	4 cut(s)	61, 207, 259, 333
MnlI	CCTC	4 cut(s)	130, 242, 359, 397
Mph1103I	ATGCAT	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	47
MspI	CCGG	3 cut(s)	48, 326, 407
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	6 cut(s)	269, 354, 380, 383, 409, 418
NaeI	GCCGGC	1 cut(s)	49
NdeII	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	430
PdiI	GCCGGC	1 cut(s)	49
PkrI	GCNGC	7 cut(s)	53, 61, 376, 379, 382, 385, 414
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	5 cut(s)	45, 70, 81, 297, 346
PspPPI	RGGWCCY	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SalI	GTCGAC	1 cut(s)	104
SatI	GCNGC	7 cut(s)	52, 60, 375, 378, 381, 384, 413
Sau3AI	GATC	8 cut(s)	90, 172, 179, 193, 198, 206, 228, 364
Sau96I	GGNCC	5 cut(s)	45, 70, 81, 297, 346
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	75, 111, 171, 282, 345, 405
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	352
SgrDI	CGTCGACG	1 cut(s)	104
SinI	GGWCC	2 cut(s)	70, 81
Sse9I	AATT	2 cut(s)	22, 32
SsiI	CCGC	6 cut(s)	51, 60, 372, 375, 378, 412
SspMI	CTAG	2 cut(s)	116, 436
StyD4I	CCNGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	5 cut(s)	105, 214, 333, 363, 430
TasI	AATT	2 cut(s)	22, 32
TauI	GCSGC	5 cut(s)	54, 62, 377, 380, 415
TseI	GCWGC	2 cut(s)	380, 383
VpaK11BI	GGWCC	2 cut(s)	70, 81
XapI	RAATTY	2 cut(s)	22, 32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	116, 436
ZraI	GACGTC	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.