Rmu_sc0004549.1_g000020

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004549.1
OG0025584
Physical Location & Seq
Forward (+)
96857 .. 98530
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
atggtagacgtaaagaaaatgttggaccaatttcatgagttgcccaatgccaacagcataattttcaaaaacgctagatgcaaggtgctttttagtattaactttttgaagttattcaagaatctgatgtggcctatttggagaacgcctcgactgtcgaacccactcacgcgtccgccaacctgcgcccttgtcaacccatcttacgcttatgctaacttgtctagttttctttgtttagatttcgttcctggtaacaaagccagtcgcgaagctttcagcagggctatggataaagccgagttgcaaaacttcatggagggaatgtatgccgctggtcttgaagcgttgaaggctgtcgttgaccagcagtctcaggcactaagccaagcagagacagaggtcgtgatgctgatgccgcatcactcccatctcgccgctgctgggcaaaccattatgttacccaaggccctcgccgagcgagggaccggcggagggggcaggaccagtgtttccctagagaaaggcagggaaagggagcccgctcagcgggagaggacactgccagtgaaggagtctgttactattgcgggcttggagcctcagaaccctccgaggtctgccaatgtaggtgttgcacaaggcgctgtgctaaggaagaggcggcaaaatgatgccatggaagaagatgaggtaggaagttctgacgagtggctagacttgtttgattcatatgctgaattcttgactgagcccgagtgggagtttcttttccacctctacgagcggctggggtttggatggatggatgggacggtatgtccaaaagccctccaacagtcgccgttcaactcggcctttggccatctgtactacgccatgggccgggttcacacctcaccatggcgggctccacataaggtgccaccccgagcacccagagcccggggcaaggccagcacagcccatctattctacaaatacaagactgatagcatcagaagaacctgtgtcccacatcgaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

342

Amino Acids

38.44

Weight (kDa)

9.22

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025584)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004549.1_g000020 Rmu_sc0035593.1_g000001
rosa_roxburghii Rroxscaffold_7G00197040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 922
AccBSI CCGCTC 2 cut(s) 545, 787
AccI GTMKAC 1 cut(s) 6
AccII CGCG 2 cut(s) 172, 270
AcoI YGGCCR 1 cut(s) 862
AcsI RAATTY 1 cut(s) 740
AfaI GTAC 1 cut(s) 872
AfiI CCNNNNNNNGG 9 cut(s) 444, 483, 495, 549, 885, 903, 945, 952, 1022
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 6 cut(s) 67, 109, 118, 344, 352, 850
AhdI GACNNNNNGTC 2 cut(s) 370, 819
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 2 cut(s) 378, 389
Ama87I CYCGRG 3 cut(s) 755, 930, 945
AoxI GGCC 6 cut(s) 131, 468, 855, 862, 883, 954
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 740
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 188, 647
AspS9I GGNCC 5 cut(s) 25, 469, 486, 504, 883
AsuC2I CCSGG 3 cut(s) 887, 946, 947
AsuHPI GGTGA 1 cut(s) 891
AvaI CYCGRG 3 cut(s) 755, 930, 945
AvaII GGWCC 3 cut(s) 25, 486, 504
BalI TGGCCA 1 cut(s) 864
BanI GGYRCC 1 cut(s) 922
BanII GRGCYC 4 cut(s) 543, 756, 913, 946
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 1 cut(s) 427
BccI CCATC 7 cut(s) 208, 438, 795, 799, 803, 873, 975
BceAI ACGGC 1 cut(s) 829
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 3 cut(s) 887, 946, 947
BcoDI GTCTC 2 cut(s) 378, 389
BfaI CTAG 4 cut(s) 75, 225, 518, 716
BfoI RGCGCY 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 6 cut(s) 333, 419, 438, 441, 665, 788
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 6 cut(s) 334, 420, 439, 442, 666, 789
Bme1390I CCNGG 4 cut(s) 252, 887, 946, 947
Bme18I GGWCC 3 cut(s) 25, 486, 504
BmeRI GACNNNNNGTC 2 cut(s) 370, 819
BmeT110I CYCGRG 3 cut(s) 755, 930, 945
BmgT120I GGNCC 5 cut(s) 25, 469, 486, 504, 883
BmiI GGNNCC 5 cut(s) 487, 540, 600, 912, 924
BmrFI CCNGG 4 cut(s) 252, 887, 946, 947
BmsI GCATC 6 cut(s) 68, 399, 405, 430, 664, 1005
BoxI GACNNNNGTC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 133, 165
Bpu10I CCTNAGC 1 cut(s) 653
Bpu1102I GCTNAGC 1 cut(s) 546
BpuMI CCSGG 3 cut(s) 887, 946, 947
BsaJI CCNNGG 7 cut(s) 465, 614, 678, 879, 902, 945, 946
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 9 cut(s) 444, 483, 495, 549, 885, 903, 945, 952, 1022
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 3 cut(s) 264, 507, 566
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 7 cut(s) 465, 614, 678, 879, 902, 945, 946
BseGI GGATG 3 cut(s) 806, 810, 814
BseLI CCNNNNNNNGG 9 cut(s) 444, 483, 495, 549, 885, 903, 945, 952, 1022
BseMII CTCAG 4 cut(s) 389, 560, 617, 741
BseNI ACTGG 3 cut(s) 264, 507, 566
BseXI GCAGC 1 cut(s) 427
BseYI CCCAGC 2 cut(s) 443, 790
Bsh1236I CGCG 2 cut(s) 172, 270
BshFI GGCC 6 cut(s) 133, 470, 857, 864, 885, 956
BshNI GGYRCC 1 cut(s) 922
BsiHKAI GWGCWC 1 cut(s) 937
BsiHKCI CYCGRG 3 cut(s) 755, 930, 945
BsiSI CCGG 3 cut(s) 489, 886, 946
BslFI GGGAC 3 cut(s) 499, 826, 998
BslI CCNNNNNNNGG 9 cut(s) 444, 483, 495, 549, 885, 903, 945, 952, 1022
BsmAI GTCTC 2 cut(s) 378, 389
BsmFI GGGAC 3 cut(s) 499, 826, 998
BsnI GGCC 6 cut(s) 133, 470, 857, 864, 885, 956
BsoBI CYCGRG 3 cut(s) 755, 930, 945
Bsp1286I GDGCHC 5 cut(s) 543, 756, 913, 937, 946
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 3 cut(s) 678, 879, 902
Bsp68I TCGCGA 1 cut(s) 270
BspANI GGCC 6 cut(s) 133, 470, 857, 864, 885, 956
BspCNI CTCAG 4 cut(s) 388, 559, 616, 742
BspFNI CGCG 2 cut(s) 172, 270
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 5 cut(s) 487, 540, 600, 912, 924
BspMI ACCTGC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 922
BsrBI CCGCTC 2 cut(s) 545, 787
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 3 cut(s) 264, 507, 566
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 7 cut(s) 465, 614, 678, 879, 902, 945, 946
BssT1I CCWWGG 4 cut(s) 465, 678, 879, 902
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 156, 817, 840
Bst6I CTCTTC 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 543, 592, 909, 958
BstDEI CTNAG 6 cut(s) 375, 383, 546, 603, 653, 750
BstDSI CCRYGG 3 cut(s) 678, 879, 902
BstF5I GGATG 3 cut(s) 806, 810, 814
BstFNI CGCG 2 cut(s) 172, 270
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 2 cut(s) 188, 647
BstMAI GTCTC 2 cut(s) 378, 389
BstMWI GCNNNNNNNGC 8 cut(s) 353, 418, 498, 547, 644, 941, 957, 962
BstNI CCWGG 1 cut(s) 252
BstPAI GACNNNNGTC 1 cut(s) 401
BstSCI CCNGG 4 cut(s) 250, 885, 944, 945
BstUI CGCG 2 cut(s) 172, 270
BstV1I GCAGC 1 cut(s) 427
BsuRI GGCC 6 cut(s) 133, 470, 857, 864, 885, 956
BtgI CCRYGG 3 cut(s) 678, 879, 902
BtsCI GGATG 3 cut(s) 806, 810, 814
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 3 cut(s) 514, 560, 573
BtuMI TCGCGA 1 cut(s) 270
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 4 cut(s) 543, 592, 909, 958
CciI TCATGA 1 cut(s) 34
CfoI GCGC 2 cut(s) 188, 647
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 5 cut(s) 25, 469, 486, 504, 883
Cfr9I CCCGGG 1 cut(s) 945
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 871
CviAII CATG 5 cut(s) 35, 316, 679, 880, 903
CviQI GTAC 1 cut(s) 871
DdeI CTNAG 6 cut(s) 375, 383, 546, 603, 653, 750
DriI GACNNNNNGTC 2 cut(s) 370, 819
EaeI YGGCCR 1 cut(s) 862
Eam1104I CTCTTC 1 cut(s) 653
Eam1105I GACNNNNNGTC 2 cut(s) 370, 819
EarI CTCTTC 1 cut(s) 653
EciI GGCGGA 2 cut(s) 165, 507
Eco130I CCWWGG 4 cut(s) 465, 678, 879, 902
Eco24I GRGCYC 4 cut(s) 543, 756, 913, 946
Eco47I GGWCC 3 cut(s) 25, 486, 504
Eco88I CYCGRG 3 cut(s) 755, 930, 945
EcoO109I RGGNCCY 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 4 cut(s) 465, 678, 879, 902
EcoT38I GRGCYC 4 cut(s) 543, 756, 913, 946
ErhI CCWWGG 4 cut(s) 465, 678, 879, 902
FaeI CATG 5 cut(s) 38, 319, 682, 883, 906
FaqI GGGAC 3 cut(s) 499, 826, 998
FatI CATG 5 cut(s) 34, 315, 678, 879, 902
FauI CCCGC 4 cut(s) 543, 550, 583, 900
FauNDI CATATG 1 cut(s) 733
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 6 cut(s) 333, 419, 438, 441, 665, 788
FokI GGATG 3 cut(s) 813, 817, 821
FriOI GRGCYC 4 cut(s) 543, 756, 913, 946
Fsp4HI GCNGC 6 cut(s) 333, 419, 438, 441, 665, 788
FspBI CTAG 4 cut(s) 75, 225, 518, 716
GlaI GCGC 2 cut(s) 187, 646
GluI GCNGC 6 cut(s) 333, 419, 438, 441, 665, 788
GsaI CCCAGC 2 cut(s) 447, 794
HaeII RGCGCY 1 cut(s) 648
HaeIII GGCC 6 cut(s) 133, 470, 857, 864, 885, 956
HapII CCGG 3 cut(s) 489, 886, 946
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 188, 647
Hin1II CATG 5 cut(s) 38, 319, 682, 883, 906
Hin6I GCGC 2 cut(s) 186, 645
HinP1I GCGC 2 cut(s) 186, 645
HincII GTYRAC 2 cut(s) 196, 364
HindII GTYRAC 2 cut(s) 196, 364
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 3 cut(s) 121, 575, 728
HpaII CCGG 3 cut(s) 489, 886, 946
HphI GGTGA 1 cut(s) 891
Hpy166II GTNNAC 4 cut(s) 7, 196, 364, 892
Hpy188I TCNGA 5 cut(s) 126, 606, 615, 706, 1001
Hpy188III TCNNGA 6 cut(s) 35, 118, 269, 341, 406, 745
Hpy8I GTNNAC 4 cut(s) 7, 196, 364, 892
HpyAV CCTTC 2 cut(s) 346, 565
HpyCH4III ACNGT 3 cut(s) 156, 817, 840
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 81, 307, 638
HpyF10VI GCNNNNNNNGC 8 cut(s) 353, 418, 498, 547, 644, 941, 957, 962
HpyF3I CTNAG 6 cut(s) 375, 383, 546, 603, 653, 750
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 5 cut(s) 38, 319, 682, 883, 906
HspAI GCGC 2 cut(s) 186, 645
LmnI GCTCC 3 cut(s) 538, 598, 916
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 6 cut(s) 68, 399, 405, 430, 664, 1005
MaeI CTAG 4 cut(s) 75, 225, 518, 716
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 254, 459, 580
MbiI CCGCTC 2 cut(s) 545, 787
MboII GAAGA 4 cut(s) 670, 695, 698, 1014
MhlI GDGCHC 5 cut(s) 543, 756, 913, 937, 946
MlsI TGGCCA 1 cut(s) 864
MluCI AATT 3 cut(s) 29, 60, 740
MluI ACGCGT 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 864
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 859
Mox20I TGGCCA 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 864
MseI TTAA 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 864
MspA1I CMGCKG 3 cut(s) 335, 440, 550
MspI CCGG 3 cut(s) 489, 886, 946
MspR9I CCNGG 4 cut(s) 252, 887, 946, 947
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 2 cut(s) 172, 270
MwoI GCNNNNNNNGC 8 cut(s) 353, 418, 498, 547, 644, 941, 957, 962
NciI CCSGG 3 cut(s) 887, 946, 947
NcoI CCATGG 3 cut(s) 678, 879, 902
NdeI CATATG 1 cut(s) 733
NlaIII CATG 5 cut(s) 38, 319, 682, 883, 906
NlaIV GGNNCC 5 cut(s) 487, 540, 600, 912, 924
NmeAIII GCCGAG 3 cut(s) 325, 502, 833
NruI TCGCGA 1 cut(s) 270
PagI TCATGA 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 121, 728
PkrI GCNGC 6 cut(s) 334, 420, 439, 442, 666, 789
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PshAI GACNNNNGTC 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 443, 790
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 5 cut(s) 487, 540, 600, 912, 924
PspPI GGNCC 5 cut(s) 25, 469, 486, 504, 883
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 1 cut(s) 872
RsaNI GTAC 1 cut(s) 871
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 6 cut(s) 333, 419, 438, 441, 665, 788
Sau96I GGNCC 5 cut(s) 25, 469, 486, 504, 883
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 4 cut(s) 252, 887, 946, 947
SduI GDGCHC 5 cut(s) 543, 756, 913, 937, 946
SfaNI GCATC 6 cut(s) 68, 399, 405, 430, 664, 1005
SinI GGWCC 3 cut(s) 25, 486, 504
SmaI CCCGGG 1 cut(s) 947
Sse9I AATT 3 cut(s) 29, 60, 740
SspMI CTAG 4 cut(s) 75, 225, 518, 716
StyD4I CCNGG 4 cut(s) 250, 885, 944, 945
StyI CCWWGG 4 cut(s) 465, 678, 879, 902
TaaI ACNGT 3 cut(s) 156, 817, 840
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 151, 158, 1021
TasI AATT 3 cut(s) 29, 60, 740
TatI WGTACW 1 cut(s) 870
TauI GCSGC 5 cut(s) 335, 421, 440, 667, 790
TfiI GAWTC 2 cut(s) 121, 728
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 3 cut(s) 514, 567, 573
TseI GCWGC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 23, 304, 720
TspMI CCCGGG 1 cut(s) 945
TspRI CASTG 3 cut(s) 514, 567, 573
VpaK11BI GGWCC 3 cut(s) 25, 486, 504
XapI RAATTY 1 cut(s) 740
XmaI CCCGGG 1 cut(s) 945
XmiI GTMKAC 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 4 cut(s) 75, 225, 518, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.