Rroxscaffold_7G00197040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0025584
Physical Location & Seq
Forward (+)
40832082 .. 40832743
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197040.1

Sequence Viewer

Length: 573 bp
ATGGGCCGGCCGTCTACCCACCAAGGCTTTCGCAGGCTTTTTAACGGGCCGGCTCGGCTTTTGGCCCTGCGGGCCGAAGGGCCACCATCAGCCCACTTGATCAGCGGGCTTTTTGATGAGGCCTATCTGAAACTAACCCGTCTTCCTCGTAAGTGTTTCCCACCAACCGGTGTCTTTGTCATCCCGTCCTACGCTAACTTGCCTTGTGCGCTTGTTTGTTCGCATCTCGTTCCCGGTAACAAAGCCACCGCAATGCGTTTGATAAAGCCATGGATCCCCCACTCGCAGACCGAGGTGGTGATACCGATGCCACATCACTCTCACATTGTCATCGCCGGGCAACCCGTCATCGTACCCGATTCTCAAGCCGAGCGCGGGCCGCCGGAGGTAGTAAGCCCGCGTCGCCCCGAGAAGACAAGGGAGAAAGTGGCTGCCCGGCGGAGTGGGTCCCGGCGGGGAGAGGACAGGCCGCCGAAGGAACCTCGCAACCATTACGGGTTGGAACCGCGAGAGCCTCCGAGGCCTACCGTGACCGGTGTCGCACAAGGGTTCCTCCACAAGAAGCAGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.11

Weight (kDa)

10.87

Isoelectric Point (pI)

59.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025584)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004549.1_g000020 Rmu_sc0035593.1_g000001
rosa_roxburghii Rroxscaffold_7G00197040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 14
AccII CGCG 3 cut(s) 375, 400, 508
AclWI GGATC 2 cut(s) 268, 281
AcoI YGGCCR 1 cut(s) 8
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 167, 375
AgeI ACCGGT 2 cut(s) 167, 533
AlwI GGATC 2 cut(s) 268, 281
Ama87I CYCGRG 1 cut(s) 407
ApeKI GCWGC 2 cut(s) 431, 565
AsiGI ACCGGT 2 cut(s) 167, 533
AspLEI GCGC 2 cut(s) 211, 375
AspS9I GGNCC 7 cut(s) 4, 47, 64, 72, 80, 377, 447
AsuC2I CCSGG 4 cut(s) 234, 337, 436, 451
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 1 cut(s) 447
BamHI GGATCC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 134, 419
BbvI GCAGC 1 cut(s) 418
BccI CCATC 1 cut(s) 94
BclI TGATCA 1 cut(s) 99
BcnI CCSGG 4 cut(s) 234, 337, 436, 451
BglI GCCNNNNNGGC 3 cut(s) 55, 71, 520
BisI GCNGC 4 cut(s) 380, 432, 470, 566
BlsI GCNGC 4 cut(s) 381, 433, 471, 567
Bme1390I CCNGG 4 cut(s) 234, 337, 436, 451
Bme18I GGWCC 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 7 cut(s) 4, 47, 64, 72, 80, 377, 447
BmiI GGNNCC 6 cut(s) 275, 448, 449, 480, 504, 551
BmrFI CCNGG 4 cut(s) 234, 337, 436, 451
BmsI GCATC 2 cut(s) 232, 297
BoxI GACNNNNGTC 1 cut(s) 536
BpiI GAAGAC 2 cut(s) 134, 419
BpuEI CTTGAG 1 cut(s) 348
BpuMI CCSGG 4 cut(s) 234, 337, 436, 451
BsaJI CCNNGG 4 cut(s) 22, 269, 291, 518
BsaWI WCCGGW 2 cut(s) 167, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 375
Bse118I RCCGGY 4 cut(s) 6, 49, 167, 533
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 4 cut(s) 22, 269, 291, 518
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 167, 375
BseMI GCAATG 1 cut(s) 258
BseX3I CGGCCG 1 cut(s) 8
BseXI GCAGC 1 cut(s) 418
Bsh1236I CGCG 3 cut(s) 375, 400, 508
Bsh1285I CGRYCG 1 cut(s) 11
BshTI ACCGGT 2 cut(s) 167, 533
BsiEI CGRYCG 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 9 cut(s) 7, 50, 168, 234, 336, 383, 436, 451, 534
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 167, 375
BsmFI GGGAC 1 cut(s) 433
BsoBI CYCGRG 1 cut(s) 407
Bsp143I GATC 2 cut(s) 99, 273
Bsp19I CCATGG 1 cut(s) 269
BspFNI CGCG 3 cut(s) 375, 400, 508
BspLI GGNNCC 6 cut(s) 275, 448, 449, 480, 504, 551
BspPI GGATC 2 cut(s) 268, 281
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 4 cut(s) 6, 49, 167, 533
BssAI RCCGGY 4 cut(s) 6, 49, 167, 533
BssECI CCNNGG 4 cut(s) 22, 269, 291, 518
BssMI GATC 2 cut(s) 99, 273
BssT1I CCWWGG 2 cut(s) 22, 269
Bst4CI ACNGT 1 cut(s) 529
BstC8I GCNNGC 7 cut(s) 8, 35, 51, 72, 107, 377, 398
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 3 cut(s) 375, 400, 508
BstHHI GCGC 2 cut(s) 211, 375
BstKTI GATC 2 cut(s) 102, 276
BstMBI GATC 2 cut(s) 99, 273
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 6 cut(s) 55, 71, 208, 379, 402, 520
BstPAI GACNNNNGTC 1 cut(s) 536
BstSCI CCNGG 4 cut(s) 232, 335, 434, 449
BstUI CGCG 3 cut(s) 375, 400, 508
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 2 cut(s) 134, 419
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 269
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 7 cut(s) 8, 35, 51, 72, 107, 377, 398
CfoI GCGC 2 cut(s) 211, 375
Cfr10I RCCGGY 4 cut(s) 6, 49, 167, 533
Cfr13I GGNCC 7 cut(s) 4, 47, 64, 72, 80, 377, 447
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 353
CspAI ACCGGT 2 cut(s) 167, 533
CviAII CATG 1 cut(s) 270
CviQI GTAC 1 cut(s) 353
DpnI GATC 2 cut(s) 101, 275
DpnII GATC 2 cut(s) 99, 273
EaeI YGGCCR 1 cut(s) 8
EagI CGGCCG 1 cut(s) 8
EciI GGCGGA 1 cut(s) 454
EclXI CGGCCG 1 cut(s) 8
Eco130I CCWWGG 2 cut(s) 22, 269
Eco147I AGGCCT 2 cut(s) 122, 523
Eco47I GGWCC 1 cut(s) 447
Eco52I CGGCCG 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 447
EcoT14I CCWWGG 2 cut(s) 22, 269
ErhI CCWWGG 2 cut(s) 22, 269
FaeI CATG 1 cut(s) 273
FaiI YATR 1 cut(s) 271
FaqI GGGAC 1 cut(s) 433
FatI CATG 1 cut(s) 269
FauI CCCGC 5 cut(s) 63, 98, 368, 405, 447
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 4 cut(s) 380, 432, 470, 566
FokI GGATG 1 cut(s) 167
FseI GGCCGGCC 1 cut(s) 10
Fsp4HI GCNGC 4 cut(s) 380, 432, 470, 566
GlaI GCGC 2 cut(s) 210, 374
GluI GCNGC 4 cut(s) 380, 432, 470, 566
HapII CCGG 9 cut(s) 7, 50, 168, 234, 336, 383, 436, 451, 534
HgaI GACGC 1 cut(s) 389
HhaI GCGC 2 cut(s) 211, 375
Hin1II CATG 1 cut(s) 273
Hin6I GCGC 2 cut(s) 209, 373
HinP1I GCGC 2 cut(s) 209, 373
HinfI GANTC 1 cut(s) 359
HpaII CCGG 9 cut(s) 7, 50, 168, 234, 336, 383, 436, 451, 534
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 129, 519
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 71, 469
HpyCH4III ACNGT 1 cut(s) 529
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 71, 208, 379, 402, 520
Hsp92II CATG 1 cut(s) 273
HspAI GCGC 2 cut(s) 209, 373
KflI GGGWCCC 1 cut(s) 447
KroI GCCGGC 2 cut(s) 6, 49
KroNI GCCGGC 2 cut(s) 8, 51
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 99, 273
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 2 cut(s) 232, 297
MaeIII GTNAC 2 cut(s) 236, 529
MalI GATC 2 cut(s) 101, 275
MboI GATC 2 cut(s) 99, 273
MboII GAAGA 2 cut(s) 134, 424
MflI RGATCY 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 9 cut(s) 112, 156, 286, 379, 454, 492, 513, 525, 563
MroNI GCCGGC 2 cut(s) 6, 49
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 2 cut(s) 105, 568
MspI CCGG 9 cut(s) 7, 50, 168, 234, 336, 383, 436, 451, 534
MspR9I CCNGG 4 cut(s) 234, 337, 436, 451
MvnI CGCG 3 cut(s) 375, 400, 508
MwoI GCNNNNNNNGC 6 cut(s) 55, 71, 208, 379, 402, 520
NaeI GCCGGC 2 cut(s) 8, 51
NciI CCSGG 4 cut(s) 234, 337, 436, 451
NcoI CCATGG 1 cut(s) 269
NdeII GATC 2 cut(s) 99, 273
NgoMIV GCCGGC 2 cut(s) 6, 49
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 6 cut(s) 275, 448, 449, 480, 504, 551
NmeAIII GCCGAG 2 cut(s) 34, 394
NmuCI GTSAC 1 cut(s) 529
PceI AGGCCT 2 cut(s) 122, 523
PdiI GCCGGC 2 cut(s) 8, 51
PfeI GAWTC 1 cut(s) 359
PinAI ACCGGT 2 cut(s) 167, 533
PkrI GCNGC 4 cut(s) 381, 433, 471, 567
PpuMI RGGWCCY 1 cut(s) 447
PshAI GACNNNNGTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 447
PspN4I GGNNCC 6 cut(s) 275, 448, 449, 480, 504, 551
PspPI GGNCC 7 cut(s) 4, 47, 64, 72, 80, 377, 447
PspPPI RGGWCCY 1 cut(s) 447
PsuI RGATCY 1 cut(s) 273
RigI GGCCGGCC 1 cut(s) 10
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 4 cut(s) 380, 432, 470, 566
Sau3AI GATC 2 cut(s) 99, 273
Sau96I GGNCC 7 cut(s) 4, 47, 64, 72, 80, 377, 447
ScrFI CCNGG 4 cut(s) 234, 337, 436, 451
SetI ASST 3 cut(s) 297, 390, 484
SfaNI GCATC 2 cut(s) 232, 297
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SinI GGWCC 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SseBI AGGCCT 2 cut(s) 122, 523
StuI AGGCCT 2 cut(s) 122, 523
StyD4I CCNGG 4 cut(s) 232, 335, 434, 449
StyI CCWWGG 2 cut(s) 22, 269
TaaI ACNGT 1 cut(s) 529
TaqII GACCGA 1 cut(s) 305
TauI GCSGC 2 cut(s) 382, 472
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 2 cut(s) 431, 565
Tsp45I GTSAC 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.