Rmu_sc0035593.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035593.1
OG0025584
Physical Location & Seq
Forward (+)
1 .. 404
404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035593.1_g000001.1.cds

Sequence Viewer

Length: 404 bp
tgtatgccgctggtcttgaagcgttgaaggctgtcgttgaccagcagtctcaggcactaagccaagcagagacagaggtcgggatgctgatgccgcatcactcccatcttgccgctgctgggcaaaccattatgttacccaaggccctcgccgagcgaggggccggcggagggggcaggaccagtgtttccctagagaaaggcagggaaagggagcccgctcagcgggagaggacactgccagtgaaggagtctgttactattgcgggcttggagcctcagaaccctccgaggtctgccaatgtaggtgttgcacaaggcgctgtgctaaggaagaggcggcaaaatgatgccatggaagaagatgaggtaggtgactcggtgacaatcggggccagccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

13.98

Weight (kDa)

5.94

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025584)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004549.1_g000020 Rmu_sc0035593.1_g000001
rosa_roxburghii Rroxscaffold_7G00197040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 8 cut(s) 8, 94, 113, 167, 218, 225, 265, 339
AfiI CCNNNNNNNGG 4 cut(s) 119, 158, 170, 224
AgsI TTSAA 2 cut(s) 19, 27
AhdI GACNNNNNGTC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 53, 64
AoxI GGCC 3 cut(s) 143, 161, 392
ApeKI GCWGC 1 cut(s) 115
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 4 cut(s) 144, 161, 179, 392
AsuHPI GGTGA 2 cut(s) 385, 393
AvaII GGWCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 53, 64
BfaI CTAG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 5 cut(s) 8, 94, 113, 116, 340
BlpI GCTNAGC 1 cut(s) 221
BlsI GCNGC 5 cut(s) 9, 95, 114, 117, 341
Bme18I GGWCC 1 cut(s) 179
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgT120I GGNCC 4 cut(s) 144, 161, 179, 392
BmiI GGNNCC 4 cut(s) 162, 215, 275, 393
BmsI GCATC 4 cut(s) 74, 80, 105, 339
BoxI GACNNNNGTC 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 328
Bpu1102I GCTNAGC 1 cut(s) 221
BsaJI CCNNGG 3 cut(s) 140, 289, 353
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 158, 170, 224
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 182, 241
BseDI CCNNGG 3 cut(s) 140, 289, 353
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 4 cut(s) 119, 158, 170, 224
BseMII CTCAG 3 cut(s) 64, 235, 292
BseNI ACTGG 2 cut(s) 182, 241
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 118
BshFI GGCC 3 cut(s) 145, 163, 394
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 4 cut(s) 119, 158, 170, 224
BsmAI GTCTC 2 cut(s) 53, 64
BsnI GGCC 3 cut(s) 145, 163, 394
Bsp1286I GDGCHC 1 cut(s) 218
Bsp1720I GCTNAGC 1 cut(s) 221
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 8 cut(s) 8, 94, 113, 167, 218, 225, 265, 339
BspANI GGCC 3 cut(s) 145, 163, 394
BspCNI CTCAG 3 cut(s) 63, 234, 291
BspLI GGNNCC 4 cut(s) 162, 215, 275, 393
BsrBI CCGCTC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 2 cut(s) 182, 241
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 3 cut(s) 140, 289, 353
BssT1I CCWWGG 2 cut(s) 140, 353
Bst6I CTCTTC 1 cut(s) 328
BstC8I GCNNGC 4 cut(s) 165, 218, 267, 396
BstDEI CTNAG 5 cut(s) 50, 58, 221, 278, 328
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstMAI GTCTC 2 cut(s) 53, 64
BstMWI GCNNNNNNNGC 5 cut(s) 28, 93, 173, 222, 319
BstPAI GACNNNNGTC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 145, 163, 394
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 3 cut(s) 189, 235, 248
Cac8I GCNNGC 4 cut(s) 165, 218, 267, 396
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 4 cut(s) 144, 161, 179, 392
CviAII CATG 1 cut(s) 354
CviJI RGCY 9 cut(s) 31, 62, 145, 163, 216, 269, 276, 394, 398
CviKI_1 RGCY 9 cut(s) 31, 62, 145, 163, 216, 269, 276, 394, 398
DdeI CTNAG 5 cut(s) 50, 58, 221, 278, 328
DriI GACNNNNNGTC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 328
Eam1105I GACNNNNNGTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 328
EciI GGCGGA 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 140, 353
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 140, 353
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 2 cut(s) 140, 353
FaeI CATG 1 cut(s) 357
FaiI YATR 3 cut(s) 5, 133, 355
FatI CATG 1 cut(s) 353
FauI CCCGC 3 cut(s) 218, 225, 258
Fnu4HI GCNGC 5 cut(s) 8, 94, 113, 116, 340
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 5 cut(s) 8, 94, 113, 116, 340
FspBI CTAG 1 cut(s) 193
GlaI GCGC 1 cut(s) 321
GluI GCNGC 5 cut(s) 8, 94, 113, 116, 340
GsaI CCCAGC 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 3 cut(s) 145, 163, 394
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 322
Hin1II CATG 1 cut(s) 357
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 2 cut(s) 250, 376
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 385, 393
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 281, 290
Hpy188III TCNNGA 2 cut(s) 16, 81
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 21, 240
HpyCH4V TGCA 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 93, 173, 222, 319
HpyF3I CTNAG 5 cut(s) 50, 58, 221, 278, 328
Hsp92II CATG 1 cut(s) 357
HspAI GCGC 1 cut(s) 320
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 213, 273
LpnPI CCDG 8 cut(s) 37, 55, 104, 162, 177, 189, 195, 254
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 4 cut(s) 74, 80, 105, 339
MaeI CTAG 1 cut(s) 193
MaeIII GTNAC 4 cut(s) 134, 255, 373, 381
MbiI CCGCTC 1 cut(s) 220
MboII GAAGA 3 cut(s) 345, 370, 373
MhlI GDGCHC 1 cut(s) 218
MlyI GAGTC 2 cut(s) 259, 370
MroNI GCCGGC 1 cut(s) 163
MspA1I CMGCKG 3 cut(s) 10, 115, 225
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 5 cut(s) 28, 93, 173, 222, 319
NaeI GCCGGC 1 cut(s) 165
NcoI CCATGG 1 cut(s) 353
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 1 cut(s) 357
NlaIV GGNNCC 4 cut(s) 162, 215, 275, 393
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 373, 381
PdiI GCCGGC 1 cut(s) 165
PkrI GCNGC 5 cut(s) 9, 95, 114, 117, 341
PleI GAGTC 2 cut(s) 258, 370
PpsI GAGTC 2 cut(s) 258, 370
PshAI GACNNNNGTC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 4 cut(s) 162, 215, 275, 393
PspPI GGNCC 4 cut(s) 144, 161, 179, 392
SatI GCNGC 5 cut(s) 8, 94, 113, 116, 340
Sau96I GGNCC 4 cut(s) 144, 161, 179, 392
SchI GAGTC 2 cut(s) 259, 370
SduI GDGCHC 1 cut(s) 218
SetI ASST 5 cut(s) 80, 295, 309, 371, 375
SfaNI GCATC 4 cut(s) 74, 80, 105, 339
SinI GGWCC 1 cut(s) 179
SsiI CCGC 8 cut(s) 8, 94, 113, 167, 218, 225, 265, 339
SspMI CTAG 1 cut(s) 193
StyI CCWWGG 2 cut(s) 140, 353
TauI GCSGC 4 cut(s) 10, 96, 115, 342
TscAI CASTG 3 cut(s) 189, 242, 248
TseFI GTSAC 2 cut(s) 373, 381
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 2 cut(s) 373, 381
TspRI CASTG 3 cut(s) 189, 242, 248
VpaK11BI GGWCC 1 cut(s) 179
XspI CTAG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.