Rmu_sc0004596.1_g000001

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004596.1
OG0021421
Physical Location & Seq
Forward (+)
2056 .. 2926
871 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
atgatgggctttaatttgcttcctgttttgaattctactagaggtggattgccgctgtccagagggaatgcgagtccctggctttcctcatgtcctttaaaaaatgaagttcctagaggtttaagtaggaattcaaagaaaagcatgcttaggctggcagtgtatgatgcaaagattttgtacggggccatctggtttcgtgttgagtgctgcaacatctgttcggatgccagtttcaaggtcaaggctgttcggatgccagtgtcaaggtcagctgccatccattgcaagccatggtacagattgacaaggatcacggatgttgcaaacagtgattctctctttaatgccaagtgtcttgatgtcaataacaataattacatgctgatgttccaagagacgaggacggacgcttcaggttcagcagttgtgtatgcactgattacttcaacaagttcagatatcatgatggatgtcgtgtacaagggtggtgattctacttatgtagatctcttaccatcaggatttgcaatccttcattgtggtacatctgactatgccaaaggcgaaggaaacggctctgatgacggtgaatgtctgctaacagttggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

204

Amino Acids

22.21

Weight (kDa)

8.4

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDF2_C PF25797 107 - 203 8.7e-18 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021421)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033661
rosa_multiflora Rmu_sc0004596.1_g000001 Rmu_sc0004596.1_g000027
rosa_samantha Rh5AG232700 Rh5CG262200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 2 cut(s) 31, 130
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 4 cut(s) 182, 299, 482, 547
AgsI TTSAA 4 cut(s) 31, 135, 238, 450
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 320
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 210, 275
ApoI RAATTY 2 cut(s) 31, 130
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 503, 602
BbvI GCAGC 2 cut(s) 197, 262
BccI CCATC 4 cut(s) 197, 287, 463, 526
BceAI ACGGC 1 cut(s) 592
BciT130I CCWGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 2 cut(s) 39, 114
BglII AGATCT 1 cut(s) 508
BisI GCNGC 3 cut(s) 53, 211, 276
BlsI GCNGC 3 cut(s) 54, 212, 277
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 3 cut(s) 157, 217, 246
Bpu10I CCTNAGC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 77, 293
Bse1I ACTGG 2 cut(s) 231, 260
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 77, 293
BseGI GGATG 5 cut(s) 232, 261, 279, 325, 478
BseMI GCAATG 1 cut(s) 283
BseNI ACTGG 2 cut(s) 231, 260
BseXI GCAGC 2 cut(s) 197, 262
BshFI GGCC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 392
BsmBI CGTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 2 cut(s) 312, 508
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 188
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 283
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 2 cut(s) 231, 260
BssECI CCNNGG 2 cut(s) 77, 293
BssMI GATC 2 cut(s) 312, 508
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 332, 590, 607
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 146, 156, 290
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 5 cut(s) 232, 261, 279, 325, 478
BstKTI GATC 2 cut(s) 315, 511
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 312, 508
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 2 cut(s) 148, 385
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 197, 262
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 5 cut(s) 232, 261, 279, 325, 478
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 4 cut(s) 165, 267, 337, 437
Cac8I GCNNGC 3 cut(s) 146, 156, 290
CciI TCATGA 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 419
Csp6I GTAC 4 cut(s) 181, 298, 481, 546
CviAII CATG 5 cut(s) 90, 145, 294, 382, 466
CviJI RGCY 8 cut(s) 9, 82, 154, 188, 248, 275, 292, 579
CviKI_1 RGCY 8 cut(s) 9, 82, 154, 188, 248, 275, 292, 579
CviQI GTAC 4 cut(s) 181, 298, 481, 546
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 314, 510
DpnII GATC 2 cut(s) 312, 508
DraI TTTAAA 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 293
Eco32I GATATC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 399
EcoRI GAATTC 2 cut(s) 31, 130
EcoRII CCWGG 1 cut(s) 77
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 5 cut(s) 93, 148, 297, 385, 469
FaiI YATR 9 cut(s) 91, 146, 165, 295, 383, 435, 467, 504, 558
FaqI GGGAC 1 cut(s) 60
FatI CATG 5 cut(s) 89, 144, 293, 381, 465
Fnu4HI GCNGC 3 cut(s) 53, 211, 276
FokI GGATG 5 cut(s) 239, 266, 268, 332, 485
Fsp4HI GCNGC 3 cut(s) 53, 211, 276
FspBI CTAG 2 cut(s) 39, 114
GluI GCNGC 3 cut(s) 53, 211, 276
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 419
Hin1II CATG 5 cut(s) 93, 148, 297, 385, 469
HinfI GANTC 3 cut(s) 73, 335, 494
HphI GGTGA 2 cut(s) 503, 602
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 5 cut(s) 226, 255, 460, 553, 583
Hpy188III TCNNGA 4 cut(s) 60, 359, 466, 522
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 545, 563
HpyCH4III ACNGT 3 cut(s) 332, 590, 607
HpyCH4V TGCA 6 cut(s) 170, 213, 288, 326, 437, 530
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 5 cut(s) 93, 148, 297, 385, 469
Kzo9I GATC 2 cut(s) 312, 508
Lsp1109I GCAGC 2 cut(s) 197, 262
LweI GCATC 3 cut(s) 157, 217, 246
MaeI CTAG 2 cut(s) 39, 114
MalI GATC 2 cut(s) 314, 510
MboI GATC 2 cut(s) 312, 508
MflI RGATCY 1 cut(s) 508
MluCI AATT 4 cut(s) 13, 31, 130, 376
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 5 cut(s) 35, 56, 97, 110, 396
MseI TTAA 4 cut(s) 12, 98, 122, 345
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 2 cut(s) 55, 275
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 293
NdeII GATC 2 cut(s) 312, 508
NlaIII CATG 5 cut(s) 93, 148, 297, 385, 469
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 2 cut(s) 148, 385
PaeI GCATGC 1 cut(s) 148
PagI TCATGA 1 cut(s) 465
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 335, 494
PkrI GCNGC 3 cut(s) 54, 212, 277
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 4 cut(s) 182, 299, 482, 547
RsaNI GTAC 4 cut(s) 181, 298, 481, 546
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 4 cut(s) 12, 98, 122, 345
SatI GCNGC 3 cut(s) 53, 211, 276
Sau3AI GATC 2 cut(s) 312, 508
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 79
SetI ASST 6 cut(s) 46, 121, 243, 272, 277, 421
SfaNI GCATC 3 cut(s) 157, 217, 246
SmiMI CAYNNNNRTG 1 cut(s) 386
SphI GCATGC 1 cut(s) 148
Sse9I AATT 4 cut(s) 13, 31, 130, 376
SsiI CCGC 1 cut(s) 53
SspMI CTAG 2 cut(s) 39, 114
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 3 cut(s) 332, 590, 607
TasI AATT 4 cut(s) 13, 31, 130, 376
TatI WGTACW 1 cut(s) 480
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 2 cut(s) 335, 494
Tru1I TTAA 4 cut(s) 12, 98, 122, 345
Tru9I TTAA 4 cut(s) 12, 98, 122, 345
TscAI CASTG 4 cut(s) 165, 267, 337, 444
TseI GCWGC 2 cut(s) 210, 275
TspDTI ATGAA 2 cut(s) 120, 527
TspGWI ACGGA 2 cut(s) 332, 422
TspRI CASTG 4 cut(s) 165, 267, 337, 444
XapI RAATTY 2 cut(s) 31, 130
XceI RCATGY 2 cut(s) 148, 385
XspI CTAG 2 cut(s) 39, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.