Rh5CG262200

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0021421
Physical Location & Seq
Forward (+)
27988647 .. 27989090
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG262200.1

Sequence Viewer

Length: 360 bp
ATGCCATTGTCAAGGTCAGCTGCCATCCATTGCAAGCCATGGTACAGATTGACAAGGATCACGGATGTTGCAAACAGTGATTCTCTCTTTAATGCCAAGTGTCTTGATGTCAATAACAAAAATTACATGCTGATGTTCCAAGAGACGAGGACAGACGCTTCAGGGTCAGCAGTTGTGTATGCACTGATTACTTCAACAAGTTCAGATATCATGATGGATGTCGTGTACGAGGGTGGTGATTCTACTTATGTAGATCTCTTACCATCAGGATTTGCAATCCTTCATTGTGGTACATCTGACTATGCCAAAGGCGAAGGAAACGGCTCTGATGACGGTGAATGTCTGCTAACAGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

119

Amino Acids

12.85

Weight (kDa)

4.47

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDF2_C PF25797 22 - 118 1.4e-18 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021421)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033661
rosa_multiflora Rmu_sc0004596.1_g000001 Rmu_sc0004596.1_g000027
rosa_samantha Rh5AG232700 Rh5CG262200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 3 cut(s) 44, 227, 292
AgsI TTSAA 1 cut(s) 195
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 248, 347
BbvI GCAGC 1 cut(s) 7
BccI CCATC 3 cut(s) 32, 208, 271
BceAI ACGGC 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 137
BglII AGATCT 1 cut(s) 253
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 3 cut(s) 24, 70, 223
BseMI GCAATG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 57, 253
Bsp19I CCATGG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 210
BspPI GGATC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 57, 253
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 77, 335, 352
BstC8I GCNNGC 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 24, 70, 223
BstKTI GATC 2 cut(s) 60, 256
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 57, 253
BstNSI RCATGY 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 24, 70, 223
BtsIMutI CAGTG 2 cut(s) 82, 182
Cac8I GCNNGC 1 cut(s) 35
CciI TCATGA 1 cut(s) 210
CseI GACGC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 43, 226, 291
CviAII CATG 3 cut(s) 39, 127, 211
CviJI RGCY 3 cut(s) 20, 37, 324
CviKI_1 RGCY 3 cut(s) 20, 37, 324
CviQI GTAC 3 cut(s) 43, 226, 291
DpnI GATC 2 cut(s) 59, 255
DpnII GATC 2 cut(s) 57, 253
Eco130I CCWWGG 1 cut(s) 38
Eco32I GATATC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 144
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 3 cut(s) 42, 130, 214
FaiI YATR 6 cut(s) 40, 128, 180, 212, 249, 303
FatI CATG 3 cut(s) 38, 126, 210
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 3 cut(s) 11, 77, 230
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HgaI GACGC 1 cut(s) 164
Hin1II CATG 3 cut(s) 42, 130, 214
HinfI GANTC 2 cut(s) 80, 239
HphI GGTGA 2 cut(s) 248, 347
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 3 cut(s) 205, 298, 328
Hpy188III TCNNGA 3 cut(s) 104, 211, 267
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 290, 308
HpyCH4III ACNGT 3 cut(s) 77, 335, 352
HpyCH4V TGCA 4 cut(s) 33, 71, 182, 275
Hsp92II CATG 3 cut(s) 42, 130, 214
Kzo9I GATC 2 cut(s) 57, 253
LpnPI CCDG 2 cut(s) 147, 252
Lsp1109I GCAGC 1 cut(s) 7
MalI GATC 2 cut(s) 59, 255
MboI GATC 2 cut(s) 57, 253
MflI RGATCY 1 cut(s) 253
MluCI AATT 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 2 cut(s) 141, 223
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 20
NcoI CCATGG 1 cut(s) 38
NdeII GATC 2 cut(s) 57, 253
NlaIII CATG 3 cut(s) 42, 130, 214
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 210
PfeI GAWTC 2 cut(s) 80, 239
PkrI GCNGC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 3 cut(s) 44, 227, 292
RsaNI GTAC 3 cut(s) 43, 226, 291
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 57, 253
SetI ASST 2 cut(s) 17, 22
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 121
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 3 cut(s) 77, 335, 352
TasI AATT 1 cut(s) 121
TfiI GAWTC 2 cut(s) 80, 239
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 82, 189
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 2 cut(s) 82, 189
XceI RCATGY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.