Rmu_sc0004596.1_g000027

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004596.1
OG0021421
Physical Location & Seq
Forward (+)
111650 .. 112222
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004596.1_g000027.1.cds

Sequence Viewer

Length: 573 bp
atgccagtgtcaaggtcagctgccatccattgcaagccatggtacagattgacaaggatcacggatgttgcaaacattgattctctctttaatgccaaggtgagcataagagtagtgtcttttaatgatctatgtttattcaatttgtttgttcatgagtcagtcatcttcttgatatttcagtgtcttgatgtcaataacaattattacatgctgatgttccaagagacgaggacggacgcttcagggtcagcagttgtgtatgcactgattacttcaacaagttcagatatcatgatggatgctgtgtacgagggtggtgattctgcttatgtaaatcttttaccatcaggatttgcaatccttccttgtggtacatctgactatgccaaaggcgaaggagatggttctgatgacggtgaatgtctgctaacagttggattccgaatcgtgtgtgatggtggccaaccgacttccaagctcactatgctgtcggttaagactaaattgatctcatctcccccaccattcagaagatcagaactggctcttaaaataaatgatggcccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

190

Amino Acids

20.76

Weight (kDa)

4.93

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021421)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033661
rosa_multiflora Rmu_sc0004596.1_g000001 Rmu_sc0004596.1_g000027
rosa_samantha Rh5AG232700 Rh5CG262200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 3 cut(s) 44, 311, 376
AgsI TTSAA 2 cut(s) 142, 279
AluBI AGCT 2 cut(s) 20, 481
AluI AGCT 2 cut(s) 20, 481
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 65
AoxI GGCC 2 cut(s) 463, 565
ApeKI GCWGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 3 cut(s) 112, 332, 431
BalI TGGCCA 1 cut(s) 465
BbvI GCAGC 1 cut(s) 7
BccI CCATC 6 cut(s) 32, 292, 355, 398, 452, 557
BcoDI GTCTC 1 cut(s) 221
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 566
BmsI GCATC 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 38, 96
Bse1I ACTGG 2 cut(s) 5, 549
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 38, 96
BseGI GGATG 3 cut(s) 24, 70, 307
BseMI GCAATG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 5, 549
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 2 cut(s) 465, 567
BsmAI GTCTC 1 cut(s) 221
BsmBI CGTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 465, 567
Bsp143I GATC 4 cut(s) 57, 127, 510, 536
Bsp19I CCATGG 1 cut(s) 38
BspANI GGCC 2 cut(s) 465, 567
BspHI TCATGA 2 cut(s) 154, 294
BspPI GGATC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 2 cut(s) 5, 549
BssECI CCNNGG 2 cut(s) 38, 96
BssMI GATC 4 cut(s) 57, 127, 510, 536
BssT1I CCWWGG 2 cut(s) 38, 96
Bst4CI ACNGT 2 cut(s) 419, 436
BstC8I GCNNGC 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 24, 70, 307
BstKTI GATC 4 cut(s) 60, 130, 513, 539
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 57, 127, 510, 536
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 465, 567
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 24, 70, 307
BtsIMutI CAGTG 3 cut(s) 12, 188, 266
Cac8I GCNNGC 1 cut(s) 35
CciI TCATGA 2 cut(s) 154, 294
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 248
Csp6I GTAC 3 cut(s) 43, 310, 375
CviAII CATG 4 cut(s) 39, 155, 211, 295
CviJI RGCY 6 cut(s) 20, 37, 465, 481, 548, 567
CviKI_1 RGCY 6 cut(s) 20, 37, 465, 481, 548, 567
CviQI GTAC 3 cut(s) 43, 310, 375
DpnI GATC 4 cut(s) 59, 129, 512, 538
DpnII GATC 4 cut(s) 57, 127, 510, 536
EaeI YGGCCR 1 cut(s) 463
Eco130I CCWWGG 2 cut(s) 38, 96
Eco32I GATATC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 38, 96
ErhI CCWWGG 2 cut(s) 38, 96
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 4 cut(s) 42, 158, 214, 298
FatI CATG 4 cut(s) 38, 154, 210, 294
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 3 cut(s) 11, 77, 314
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 465, 567
HgaI GACGC 1 cut(s) 248
Hin1II CATG 4 cut(s) 42, 158, 214, 298
HinfI GANTC 5 cut(s) 80, 158, 323, 441, 447
HphI GGTGA 3 cut(s) 112, 332, 431
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 6 cut(s) 289, 382, 412, 446, 533, 541
Hpy188III TCNNGA 5 cut(s) 155, 172, 188, 295, 351
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 374, 392
HpyCH4III ACNGT 2 cut(s) 419, 436
HpyCH4V TGCA 4 cut(s) 33, 71, 266, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
Hsp92II CATG 4 cut(s) 42, 158, 214, 298
Kzo9I GATC 4 cut(s) 57, 127, 510, 536
LpnPI CCDG 4 cut(s) 18, 231, 336, 530
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 292
MalI GATC 4 cut(s) 59, 129, 512, 538
MboI GATC 4 cut(s) 57, 127, 510, 536
MboII GAAGA 2 cut(s) 160, 546
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 3 cut(s) 142, 202, 506
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 2 cut(s) 225, 307
Mox20I TGGCCA 1 cut(s) 465
MscI TGGCCA 1 cut(s) 465
MseI TTAA 4 cut(s) 90, 123, 498, 552
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 487
NcoI CCATGG 1 cut(s) 38
NdeII GATC 4 cut(s) 57, 127, 510, 536
NlaIII CATG 4 cut(s) 42, 158, 214, 298
NspI RCATGY 1 cut(s) 214
PagI TCATGA 2 cut(s) 154, 294
PfeI GAWTC 4 cut(s) 80, 323, 441, 447
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 3 cut(s) 44, 311, 376
RsaNI GTAC 3 cut(s) 43, 310, 375
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 4 cut(s) 90, 123, 498, 552
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 4 cut(s) 57, 127, 510, 536
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 1 cut(s) 167
SetI ASST 4 cut(s) 17, 22, 102, 483
SfaNI GCATC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 3 cut(s) 142, 202, 506
StyI CCWWGG 2 cut(s) 38, 96
TaaI ACNGT 2 cut(s) 419, 436
TasI AATT 3 cut(s) 142, 202, 506
TfiI GAWTC 4 cut(s) 80, 323, 441, 447
Tru1I TTAA 4 cut(s) 90, 123, 498, 552
Tru9I TTAA 4 cut(s) 90, 123, 498, 552
TscAI CASTG 3 cut(s) 12, 188, 273
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 143
TspGWI ACGGA 2 cut(s) 77, 251
TspRI CASTG 3 cut(s) 12, 188, 273
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.