Rmu_sc0004602.1_g000045

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004602.1
OG0019874
Physical Location & Seq
Reverse (-)
166655 .. 167899
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
ctgaaatcaattaccagagcaaacgtttgtgacgcttactcttatcgatcgattcgaagaggtcgtcttcatcatcgatgtcttcgcgttcgacgagaagtagctggcttctctctattcggttctaaggaccattccattaacggcgtcggatttctggatatcacctcagccgtcggcggatcttcctgccccgccagcatcggactcccaaaatccgatttcaatagtagatttgagataatgagtctctgtgaggacgtggacaatctcggtggtgcttcctccgtcaccggaaacgggaagcacttaggcgacgcgagtggtaaaattcttgagctcctcgatgacgctgttgaaggtggtcccgccggagaaaacgaagaaggaaggctgggcggcggggaaacggttgcgagtagaggaggagcggcagtgtctgaaaatgtgtatgcacttaaatccagcccaacccctattcagatcctagatacgccactggttgcgttcaagattaaaaccactaaccctaagaagtacattgcaaatcccaagtctggtgttatacaggctcggcactcatgtgtcatcagactcacccagcaagtcatcgttaaatatcctgcaactgtggagtgcaaagacaaatacctcatacagactacaatagtgcctccaaattatgctgctgatgagcttccgaaagatacttttgccaaggaaagtggaaggagaatagaagagtgcaagcttccagttgtgtatatcattcctccagatttgggtcaccaagaacatgatatatggagcatgctaagagcaagtgcagcggttgcactttgtccgggaaaattgggggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

287

Amino Acids

30.79

Weight (kDa)

8.38

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Motile_Sperm PF00635 168 - 235 1.4e-12 MSP (Major sperm protein) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019874)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117201
rosa_multiflora Rmu_sc0004602.1_g000045
rosa_roxburghii Rroxscaffold_2G00126650
rosa_rugosa Rorug02G0210800
rosa_samantha Rh2BG279100 Rh2DG273800 Rh2DG293200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 431
AccII CGCG 2 cut(s) 87, 320
AciI CCGC 7 cut(s) 180, 195, 369, 399, 402, 431, 830
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 190, 478
AcsI RAATTY 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 3 cut(s) 300, 557, 782
AgsI TTSAA 3 cut(s) 226, 359, 511
AjiI CACGTC 1 cut(s) 262
AleI CACNNNNGTG 1 cut(s) 582
AluBI AGCT 4 cut(s) 104, 340, 697, 751
AluI AGCT 4 cut(s) 104, 340, 697, 751
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 190, 478
AlwNI CAGNNNCTG 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 686, 827
ApoI RAATTY 1 cut(s) 330
ArsI GACNNNNNNTTYG 4 cut(s) 49, 81, 539, 571
AspS9I GGNCC 2 cut(s) 130, 365
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 4 cut(s) 157, 283, 589, 779
AsuII TTCGAA 1 cut(s) 55
AvaII GGWCC 2 cut(s) 130, 365
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 59, 74
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 673, 839
BceAI ACGGC 2 cut(s) 158, 160
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 488
BisI GCNGC 4 cut(s) 400, 432, 687, 828
BlsI GCNGC 4 cut(s) 401, 433, 688, 829
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 2 cut(s) 130, 365
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 130, 365
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 846
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 2 cut(s) 59, 74
BpmI CTGGAG 1 cut(s) 759
Bpu10I CCTNAGC 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 846
Bsa29I ATCGAT 3 cut(s) 46, 50, 76
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 557, 782
Bse1I ACTGG 2 cut(s) 504, 755
Bse3DI GCAATG 1 cut(s) 540
BseCI ATCGAT 3 cut(s) 46, 50, 76
BseDI CCNNGG 1 cut(s) 717
BseLI CCNNNNNNNGG 3 cut(s) 300, 557, 782
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 504, 755
BseRI GAGGAG 3 cut(s) 332, 438, 441
BseXI GCAGC 2 cut(s) 673, 839
BseYI CCCAGC 2 cut(s) 394, 600
BsgI GTGCAG 1 cut(s) 846
Bsh1236I CGCG 2 cut(s) 87, 320
Bsh1285I CGRYCG 1 cut(s) 50
BshVI ATCGAT 3 cut(s) 46, 50, 76
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 3 cut(s) 294, 372, 845
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 3 cut(s) 300, 557, 782
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 3 cut(s) 47, 182, 483
BspACI CCGC 7 cut(s) 180, 195, 369, 399, 402, 431, 830
BspCNI CTCAG 1 cut(s) 182
BspDI ATCGAT 3 cut(s) 46, 50, 76
BspFNI CGCG 2 cut(s) 87, 320
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 190, 478
BspT104I TTCGAA 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 2 cut(s) 504, 755
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 3 cut(s) 47, 182, 483
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 717
Bst4CI ACNGT 2 cut(s) 412, 631
Bst6I CTCTTC 2 cut(s) 52, 735
BstACI GRCGYC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 833
BstBI TTCGAA 1 cut(s) 55
BstC8I GCNNGC 4 cut(s) 106, 199, 749, 812
BstDEI CTNAG 5 cut(s) 126, 169, 310, 531, 815
BstEII GGTNACC 1 cut(s) 785
BstFNI CGCG 2 cut(s) 87, 320
BstKTI GATC 3 cut(s) 50, 185, 486
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 47, 182, 483
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 3 cut(s) 198, 827, 833
BstNSI RCATGY 1 cut(s) 814
BstPI GGTNACC 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 844
BstUI CGCG 2 cut(s) 87, 320
BstV1I GCAGC 2 cut(s) 673, 839
BstV2I GAAGAC 2 cut(s) 59, 74
BstX2I RGATCY 2 cut(s) 182, 483
BstYI RGATCY 2 cut(s) 182, 483
Bsu15I ATCGAT 3 cut(s) 46, 50, 76
BsuTUI ATCGAT 3 cut(s) 46, 50, 76
BtrI CACGTC 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 441, 497
Cac8I GCNNGC 4 cut(s) 106, 199, 749, 812
CaiI CAGNNNCTG 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 130, 365
ClaI ATCGAT 3 cut(s) 46, 50, 76
CseI GACGC 4 cut(s) 41, 136, 326, 359
Csp6I GTAC 1 cut(s) 538
CspCI CAANNNNNGTGG 4 cut(s) 256, 291, 706, 741
CviAII CATG 3 cut(s) 582, 797, 811
CviJI RGCY 9 cut(s) 104, 108, 173, 340, 394, 468, 572, 697, 751
CviKI_1 RGCY 9 cut(s) 104, 108, 173, 340, 394, 468, 572, 697, 751
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 5 cut(s) 126, 169, 310, 531, 815
DpnI GATC 3 cut(s) 49, 184, 485
DpnII GATC 3 cut(s) 47, 182, 483
Eam1104I CTCTTC 2 cut(s) 52, 735
EarI CTCTTC 2 cut(s) 52, 735
EciI GGCGGA 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 130, 365
Eco53kI GAGCTC 1 cut(s) 340
Eco91I GGTNACC 1 cut(s) 785
EcoICRI GAGCTC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 785
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 717
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 3 cut(s) 585, 800, 814
FaqI GGGAC 1 cut(s) 351
FatI CATG 3 cut(s) 581, 796, 810
FauI CCCGC 3 cut(s) 202, 376, 395
Fnu4HI GCNGC 4 cut(s) 400, 432, 687, 828
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 4 cut(s) 400, 432, 687, 828
FspBI CTAG 1 cut(s) 488
GluI GCNGC 4 cut(s) 400, 432, 687, 828
GsaI CCCAGC 2 cut(s) 398, 604
GsuI CTGGAG 1 cut(s) 759
HapII CCGG 3 cut(s) 294, 372, 845
HgaI GACGC 4 cut(s) 41, 136, 326, 359
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 3 cut(s) 585, 800, 814
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 4 cut(s) 52, 207, 247, 594
HpaII CCGG 3 cut(s) 294, 372, 845
HphI GGTGA 4 cut(s) 157, 283, 589, 779
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 7 cut(s) 152, 206, 220, 442, 483, 593, 702
Hpy188III TCNNGA 4 cut(s) 158, 335, 511, 776
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 4 cut(s) 96, 152, 179, 320
HpyAV CCTTC 4 cut(s) 353, 380, 384, 723
HpyCH4III ACNGT 2 cut(s) 412, 631
HpyCH4IV ACGT 2 cut(s) 24, 261
HpyCH4V TGCA 7 cut(s) 455, 545, 626, 639, 747, 827, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 827, 833
HpyF3I CTNAG 5 cut(s) 126, 169, 310, 531, 815
HpySE526I ACGT 2 cut(s) 24, 261
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 3 cut(s) 585, 800, 814
Kzo9I GATC 3 cut(s) 47, 182, 483
LmnI GCTCC 3 cut(s) 345, 428, 807
Lsp1109I GCAGC 2 cut(s) 673, 839
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 488
MaeII ACGT 2 cut(s) 24, 261
MaeIII GTNAC 3 cut(s) 29, 289, 785
MalI GATC 3 cut(s) 49, 184, 485
MbiI CCGCTC 1 cut(s) 431
MboI GATC 3 cut(s) 47, 182, 483
MboII GAAGA 6 cut(s) 59, 69, 74, 177, 395, 752
MflI RGATCY 2 cut(s) 182, 483
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 4 cut(s) 9, 330, 679, 851
MlyI GAGTC 3 cut(s) 201, 256, 588
MmeI TCCRAC 1 cut(s) 130
MseI TTAA 4 cut(s) 141, 459, 516, 615
MslI CAYNNNNRTG 1 cut(s) 582
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 3 cut(s) 294, 372, 845
MspR9I CCNGG 1 cut(s) 846
MvnI CGCG 2 cut(s) 87, 320
MwoI GCNNNNNNNGC 3 cut(s) 198, 827, 833
NciI CCSGG 1 cut(s) 846
NdeII GATC 3 cut(s) 47, 182, 483
NlaIII CATG 3 cut(s) 585, 800, 814
NlaIV GGNNCC 1 cut(s) 367
NmeAIII GCCGAG 1 cut(s) 553
NmuCI GTSAC 3 cut(s) 29, 289, 785
NspI RCATGY 1 cut(s) 814
NspV TTCGAA 1 cut(s) 55
OliI CACNNNNGTG 1 cut(s) 582
PaeI GCATGC 1 cut(s) 814
PcsI WCGNNNNNNNCGW 3 cut(s) 52, 61, 91
PfeI GAWTC 1 cut(s) 52
PfoI TCCNGGA 1 cut(s) 844
PkrI GCNGC 4 cut(s) 401, 433, 688, 829
Ple19I CGATCG 1 cut(s) 50
PleI GAGTC 3 cut(s) 201, 255, 588
PpsI GAGTC 3 cut(s) 201, 255, 588
Psp124BI GAGCTC 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 785
PspFI CCCAGC 2 cut(s) 394, 600
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 2 cut(s) 130, 365
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 182, 483
PvuI CGATCG 1 cut(s) 50
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 582
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 4 cut(s) 141, 459, 516, 615
SatI GCNGC 4 cut(s) 400, 432, 687, 828
Sau3AI GATC 3 cut(s) 47, 182, 483
Sau96I GGNCC 2 cut(s) 130, 365
SchI GAGTC 3 cut(s) 201, 256, 588
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 55
SinI GGWCC 2 cut(s) 130, 365
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SphI GCATGC 1 cut(s) 814
Sse9I AATT 4 cut(s) 9, 330, 679, 851
SsiI CCGC 7 cut(s) 180, 195, 369, 399, 402, 431, 830
SspMI CTAG 1 cut(s) 488
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 2 cut(s) 412, 631
TaiI ACGT 2 cut(s) 27, 264
TaqI TCGA 6 cut(s) 46, 50, 55, 76, 91, 345
TasI AATT 4 cut(s) 9, 330, 679, 851
TatI WGTACW 1 cut(s) 537
TauI GCSGC 2 cut(s) 402, 434
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 4 cut(s) 141, 459, 516, 615
Tru9I TTAA 4 cut(s) 141, 459, 516, 615
TscAI CASTG 2 cut(s) 441, 504
TseFI GTSAC 3 cut(s) 29, 289, 785
TseI GCWGC 2 cut(s) 686, 827
Tsp45I GTSAC 3 cut(s) 29, 289, 785
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 2 cut(s) 441, 504
VpaK11BI GGWCC 2 cut(s) 130, 365
XapI RAATTY 1 cut(s) 330
XceI RCATGY 1 cut(s) 814
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.