Rh2DG273800

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019874
Physical Location & Seq
Forward (+)
30440880 .. 30462069
21190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG273800.1

Sequence Viewer

Length: 645 bp
ATGTTGTCTGGAGAACGAAAAAAATCGTTCACATCTTGGCGGTCCACCAATAGCGACGGTGATGGTAATCAGTTGATCATCTCTGTTCATCCCGATGATAAACTGAAATTTCTAGTTGAGCGAAGAAAGCAAAGCTCTTGTAATCTAAACGTTTTCAATAACACAGAACACTGTGTTGCGTTCAAGATTAAAACCACAAACCCTAAGAAGTACATTGCAAATCCCAAGTCTGGTGTTATACAGGCTCGGCACTCATGTGTCATCAGACTCACCCAGCAAGTCATCGTTAAATATCCTCTAACTGGGGAGTGCAAAGACAAATACCTCATACAGACTACAATAGTGCCTCCAAATTATGCCGCTGATGAGCTTCCGAAAGATACTTTTGCCAAGGAAAGTGGAAGGAGAATAGAGGAGTGCAAGCTTCCAGTTGTGTATATAATTCCTCCAGATTTGGGTCACCAGGAACATGATATATGGAGCCTGCTAAGAGATAGTGTCAAAGATGGCAAAATACCGGTAACTGAACCAAGCCCAGACCGTGACCTGACGGTGACTTTGTTGCAGCAGGGGAGGTCAGTATCCAATGCATGGGGTCACCATATCATGATAAACATCACTAGGAAGACCTTTGACTATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

214

Amino Acids

24.37

Weight (kDa)

9.15

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Motile_Sperm PF00635 27 - 126 8e-21 MSP (Major sperm protein) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019874)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117201
rosa_multiflora Rmu_sc0004602.1_g000045
rosa_roxburghii Rroxscaffold_2G00126650
rosa_rugosa Rorug02G0210800
rosa_samantha Rh2BG279100 Rh2DG273800 Rh2DG293200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 643
AccB7I CCANNNNNTGG 1 cut(s) 591
AciI CCGC 2 cut(s) 40, 360
AclI AACGTT 1 cut(s) 150
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 4 cut(s) 230, 302, 455, 591
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 2 cut(s) 157, 184
AjnI CCWGG 1 cut(s) 462
AleI CACNNNNGTG 1 cut(s) 255
AluBI AGCT 3 cut(s) 135, 370, 424
AluI AGCT 3 cut(s) 135, 370, 424
ApeKI GCWGC 1 cut(s) 565
ApoI RAATTY 1 cut(s) 107
ArsI GACNNNNNNTTYG 4 cut(s) 212, 244, 541, 573
AsiGI ACCGGT 1 cut(s) 517
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 5 cut(s) 71, 262, 452, 565, 590
AvaII GGWCC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 577
BccI CCATC 2 cut(s) 56, 500
BciT130I CCWGG 1 cut(s) 464
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 1 cut(s) 75
BfaI CTAG 2 cut(s) 113, 621
BfuI GTATCC 1 cut(s) 592
BisI GCNGC 2 cut(s) 360, 566
BlsI GCNGC 2 cut(s) 361, 567
Bme1390I CCNGG 1 cut(s) 464
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 482
BmrFI CCNGG 1 cut(s) 464
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 2 cut(s) 30, 432
BsaBI GATNNNNATC 2 cut(s) 66, 614
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 517
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 302, 455, 591
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 307, 428
Bse3DI GCAATG 1 cut(s) 213
Bse8I GATNNNNATC 2 cut(s) 66, 614
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 88
BseJI GATNNNNATC 2 cut(s) 66, 614
BseLI CCNNNNNNNGG 4 cut(s) 230, 302, 455, 591
BseMI GCAATG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 307, 428
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 577
BseYI CCCAGC 1 cut(s) 273
BshTI ACCGGT 1 cut(s) 517
BsiSI CCGG 1 cut(s) 518
BslI CCNNNNNNNGG 4 cut(s) 230, 302, 455, 591
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 2 cut(s) 40, 360
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 307, 428
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 4 cut(s) 59, 173, 542, 553
BstC8I GCNNGC 2 cut(s) 422, 485
BstDEI CTNAG 2 cut(s) 204, 488
BstEII GGTNACC 2 cut(s) 458, 596
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 464
BstPI GGTNACC 2 cut(s) 458, 596
BstSCI CCNGG 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 577
BstV2I GAAGAC 1 cut(s) 632
BsuI GTATCC 1 cut(s) 592
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 422, 485
CciI TCATGA 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 211
CspAI ACCGGT 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 4 cut(s) 255, 470, 591, 607
CviJI RGCY 6 cut(s) 135, 245, 370, 424, 483, 534
CviKI_1 RGCY 6 cut(s) 135, 245, 370, 424, 483, 534
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 204, 488
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 42
Eco91I GGTNACC 2 cut(s) 458, 596
EcoO65I GGTNACC 2 cut(s) 458, 596
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 4 cut(s) 258, 473, 594, 610
FatI CATG 4 cut(s) 254, 469, 590, 606
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 360, 566
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 360, 566
FspBI CTAG 2 cut(s) 113, 621
GluI GCNGC 2 cut(s) 360, 566
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 2 cut(s) 30, 432
HapII CCGG 1 cut(s) 518
Hin1II CATG 4 cut(s) 258, 473, 594, 610
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 1 cut(s) 267
HpaII CCGG 1 cut(s) 518
HphI GGTGA 5 cut(s) 71, 262, 452, 565, 590
Hpy166II GTNNAC 2 cut(s) 30, 45
Hpy188I TCNGA 2 cut(s) 266, 375
Hpy188III TCNNGA 5 cut(s) 9, 92, 184, 449, 607
Hpy8I GTNNAC 2 cut(s) 30, 45
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 4 cut(s) 59, 173, 542, 553
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 218, 312, 420, 565, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 204, 488
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 258, 473, 594, 610
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 1 cut(s) 577
MaeI CTAG 2 cut(s) 113, 621
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 5 cut(s) 458, 520, 542, 553, 596
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 135, 637
MluCI AATT 3 cut(s) 107, 352, 441
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 6 cut(s) 306, 335, 357, 406, 456, 567
Mph1103I ATGCAT 1 cut(s) 592
MseI TTAA 2 cut(s) 189, 288
MslI CAYNNNNRTG 2 cut(s) 93, 255
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 464
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeII GATC 1 cut(s) 75
NlaIII CATG 4 cut(s) 258, 473, 594, 610
NlaIV GGNNCC 1 cut(s) 482
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 4 cut(s) 458, 542, 553, 596
NsiI ATGCAT 1 cut(s) 592
OliI CACNNNNGTG 1 cut(s) 255
PagI TCATGA 1 cut(s) 606
PflMI CCANNNNNTGG 1 cut(s) 591
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 2 cut(s) 361, 567
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PsiI TTATAA 1 cut(s) 643
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 462
PspEI GGTNACC 2 cut(s) 458, 596
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 482
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 2 cut(s) 93, 255
SaqAI TTAA 2 cut(s) 189, 288
SatI GCNGC 2 cut(s) 360, 566
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 464
SetI ASST 8 cut(s) 137, 153, 327, 372, 426, 549, 578, 632
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 93, 255
Sse9I AATT 3 cut(s) 107, 352, 441
SsiI CCGC 2 cut(s) 40, 360
SspMI CTAG 2 cut(s) 113, 621
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 4 cut(s) 59, 173, 542, 553
TaiI ACGT 1 cut(s) 153
TasI AATT 3 cut(s) 107, 352, 441
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 189, 288
Tru9I TTAA 2 cut(s) 189, 288
TscAI CASTG 1 cut(s) 176
TseFI GTSAC 4 cut(s) 458, 542, 553, 596
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 4 cut(s) 458, 542, 553, 596
TspDTI ATGAA 1 cut(s) 77
TspRI CASTG 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 1 cut(s) 107
XspI CTAG 2 cut(s) 113, 621
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.