Rh2BG279100

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019874
Physical Location & Seq
Forward (+)
30487107 .. 30489537
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG279100.1

Sequence Viewer

Length: 546 bp
ATGTGTCATCAGACTCACCCAGCAAGTCATCGTTTTACTGTGGAGTGCAAAGACAAATACCTCATACAGACTACAATAGTGCCTCCAAATTATGCTGCTGATGAGCTTCCGAAAGATACTTTTGCCAAGGAAATTGGAAGGAGAATAGAGGAGTGCAAGCTTCCAGTTGTGTATATCATTCCTCCAGATTTGGGTCACCAGGAACATGATATATGGAGCATGCTAAGAGATAGTGTCAAAGATGGCAAAATACCGGTAACTGAACCAAGCCCAGACCGTGACCTGACGGTGACTTTGTTGCAGCATGTATGCTGTGTTTTTCTGAGATCTGAATCTCGAAGCTTCGATCTGATGGCGGCGACCACCGCCGCCGGAGCTGCTGTGATTCTGTACTACATGTTTGGCCGGAGAGCGTCATCGAAGCGGAGATTTCTCCAAGTCGAGATCGACGAGGAGGAGGCTTTCTCAGCGACAGGCTCAGGCGCCGGCCACGTGGATCGAGTCAATGTCCACCTTGTCCGATACGCTATGTTTCACTTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

181

Amino Acids

20.5

Weight (kDa)

6.29

Isoelectric Point (pI)

66.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019874)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117201
rosa_multiflora Rmu_sc0004602.1_g000045
rosa_roxburghii Rroxscaffold_2G00126650
rosa_rugosa Rorug02G0210800
rosa_samantha Rh2BG279100 Rh2DG273800 Rh2DG293200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 482
AciI CCGC 4 cut(s) 356, 366, 369, 424
AclWI GGATC 1 cut(s) 504
AcoI YGGCCR 2 cut(s) 403, 487
AcvI CACGTG 1 cut(s) 493
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 396
AgeI ACCGGT 1 cut(s) 253
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 4 cut(s) 106, 160, 342, 377
AluI AGCT 4 cut(s) 106, 160, 342, 377
AlwI GGATC 1 cut(s) 504
AoxI GGCC 2 cut(s) 403, 487
ApeKI GCWGC 3 cut(s) 95, 301, 377
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AsiGI ACCGGT 1 cut(s) 253
AspLEI GCGC 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 8, 188, 301
BanI GGYRCC 1 cut(s) 482
BbrPI CACGTG 1 cut(s) 493
BbvI GCAGC 3 cut(s) 82, 313, 364
BccI CCATC 2 cut(s) 236, 346
BciT130I CCWGG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 486
BglII AGATCT 1 cut(s) 326
BisI GCNGC 5 cut(s) 96, 302, 357, 369, 378
BlsI GCNGC 5 cut(s) 97, 303, 358, 370, 379
Bme1390I CCNGG 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 478
BsaAI YACGTR 1 cut(s) 493
BsaBI GATNNNNATC 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 2 cut(s) 253, 485
Bse1I ACTGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 331
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 3 cut(s) 314, 480, 492
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 3 cut(s) 164, 467, 470
BseXI GCAGC 3 cut(s) 82, 313, 364
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 2 cut(s) 405, 489
BshNI GGYRCC 1 cut(s) 482
BshTI ACCGGT 1 cut(s) 253
BsiSI CCGG 4 cut(s) 254, 372, 406, 486
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 2 cut(s) 405, 489
Bsp143I GATC 4 cut(s) 326, 346, 444, 496
BspACI CCGC 4 cut(s) 356, 366, 369, 424
BspANI GGCC 2 cut(s) 405, 489
BspCNI CTCAG 3 cut(s) 315, 479, 491
BspLI GGNNCC 1 cut(s) 484
BspPI GGATC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 482
BsrFI RCCGGY 2 cut(s) 253, 485
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 2 cut(s) 253, 485
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 4 cut(s) 326, 346, 444, 496
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 40, 278, 289
BstACI GRCGYC 1 cut(s) 483
BstBAI YACGTR 1 cut(s) 493
BstC8I GCNNGC 3 cut(s) 158, 221, 487
BstDEI CTNAG 4 cut(s) 224, 323, 466, 478
BstEII GGTNACC 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 4 cut(s) 329, 349, 447, 499
BstMBI GATC 4 cut(s) 326, 346, 444, 496
BstMWI GCNNNNNNNGC 4 cut(s) 365, 374, 377, 467
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 3 cut(s) 223, 308, 400
BstPI GGTNACC 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 82, 313, 364
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 2 cut(s) 405, 489
Cac8I GCNNGC 3 cut(s) 158, 221, 487
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 2 cut(s) 253, 485
CseI GACGC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 391
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 4 cut(s) 206, 220, 305, 397
CviJI RGCY 9 cut(s) 106, 160, 270, 342, 377, 405, 461, 477, 489
CviKI_1 RGCY 9 cut(s) 106, 160, 270, 342, 377, 405, 461, 477, 489
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 4 cut(s) 224, 323, 466, 478
DinI GGCGCC 1 cut(s) 484
DpnI GATC 4 cut(s) 328, 348, 446, 498
DpnII GATC 4 cut(s) 326, 346, 444, 496
EaeI YGGCCR 2 cut(s) 403, 487
Eco130I CCWWGG 1 cut(s) 126
Eco72I CACGTG 1 cut(s) 493
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 4 cut(s) 209, 223, 308, 400
FatI CATG 4 cut(s) 205, 219, 304, 396
Fnu4HI GCNGC 5 cut(s) 96, 302, 357, 369, 378
Fsp4HI GCNGC 5 cut(s) 96, 302, 357, 369, 378
GlaI GCGC 1 cut(s) 484
GluI GCNGC 5 cut(s) 96, 302, 357, 369, 378
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 2 cut(s) 405, 489
HapII CCGG 4 cut(s) 254, 372, 406, 486
HgaI GACGC 1 cut(s) 402
HhaI GCGC 1 cut(s) 485
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 4 cut(s) 209, 223, 308, 400
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HindIII AAGCTT 2 cut(s) 158, 340
HinfI GANTC 4 cut(s) 13, 332, 385, 501
HpaII CCGG 4 cut(s) 254, 372, 406, 486
HphI GGTGA 3 cut(s) 8, 188, 301
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 7 cut(s) 12, 111, 324, 331, 351, 521, 545
Hpy188III TCNNGA 3 cut(s) 185, 336, 442
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 3 cut(s) 40, 278, 289
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 48, 156, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 374, 377, 467
HpyF3I CTNAG 4 cut(s) 224, 323, 466, 478
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 4 cut(s) 209, 223, 308, 400
HspAI GCGC 1 cut(s) 483
KasI GGCGCC 1 cut(s) 482
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Kzo9I GATC 4 cut(s) 326, 346, 444, 496
LmnI GCTCC 2 cut(s) 216, 374
Lsp1109I GCAGC 3 cut(s) 82, 313, 364
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 4 cut(s) 194, 256, 278, 289
MalI GATC 4 cut(s) 328, 348, 446, 498
MboI GATC 4 cut(s) 326, 346, 444, 496
MflI RGATCY 1 cut(s) 326
MluCI AATT 2 cut(s) 88, 132
Mly113I GGCGCC 1 cut(s) 483
MlyI GAGTC 2 cut(s) 7, 510
MnlI CCTC 7 cut(s) 71, 93, 142, 192, 445, 448, 451
MroNI GCCGGC 1 cut(s) 485
MspI CCGG 4 cut(s) 254, 372, 406, 486
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 4 cut(s) 365, 374, 377, 467
NaeI GCCGGC 1 cut(s) 487
NarI GGCGCC 1 cut(s) 483
NdeII GATC 4 cut(s) 326, 346, 444, 496
NgoMIV GCCGGC 1 cut(s) 485
NlaIII CATG 4 cut(s) 209, 223, 308, 400
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 3 cut(s) 194, 278, 289
NspI RCATGY 3 cut(s) 223, 308, 400
PaeI GCATGC 1 cut(s) 223
PciI ACATGT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PdiI GCCGGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 332, 385
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 5 cut(s) 97, 303, 358, 370, 379
PleI GAGTC 2 cut(s) 7, 509
PluTI GGCGCC 1 cut(s) 486
PmaCI CACGTG 1 cut(s) 493
PmlI CACGTG 1 cut(s) 493
PpsI GAGTC 2 cut(s) 7, 509
Ppu21I YACGTR 1 cut(s) 493
PscI ACATGT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 198
PspCI CACGTG 1 cut(s) 493
PspEI GGTNACC 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 484
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SatI GCNGC 5 cut(s) 96, 302, 357, 369, 378
Sau3AI GATC 4 cut(s) 326, 346, 444, 496
SchI GAGTC 2 cut(s) 7, 510
ScrFI CCNGG 1 cut(s) 200
SetI ASST 8 cut(s) 63, 108, 162, 285, 344, 379, 495, 516
SfoI GGCGCC 1 cut(s) 484
SphI GCATGC 1 cut(s) 223
Sse9I AATT 2 cut(s) 88, 132
SsiI CCGC 4 cut(s) 356, 366, 369, 424
SspDI GGCGCC 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 40, 278, 289
TaiI ACGT 1 cut(s) 495
TaqI TCGA 6 cut(s) 337, 345, 419, 441, 447, 499
TasI AATT 2 cut(s) 88, 132
TatI WGTACW 1 cut(s) 390
TauI GCSGC 2 cut(s) 359, 371
TfiI GAWTC 2 cut(s) 332, 385
TseFI GTSAC 3 cut(s) 194, 278, 289
TseI GCWGC 3 cut(s) 95, 301, 377
Tsp45I GTSAC 3 cut(s) 194, 278, 289
XceI RCATGY 3 cut(s) 223, 308, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.