Rmu_sc0004659.1_g000001

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004659.1
OG0021613
Physical Location & Seq
Forward (+)
1651 .. 2106
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004659.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atggctttgaacctgattcggactgcttcccatgaagctgaaaaccccgtgggctgctctctgaagggggcctttgagctccttgaaccaaaactaagacccccattggcaataacaatcccaacctcacaggaatacttgctgctcaacaaggctattttatatggagttctatgcgaaacatattttgccaaaacacatattaagcatttacatgccattgtcaccgatgggtatggcttgtttactagtttgattgctaaggttgtgagtgaattgtacacgaaacttgttgacccggtggaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttgtggttgtgttttgagactgagcattttttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

151

Amino Acids

16.88

Weight (kDa)

5.61

Isoelectric Point (pI)

22.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021613)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004659.1_g000001 Rmu_sc0008949.1_g000006 Rmu_ssc0000018.1_g000052
rosa_samantha Rh2AG326600
rosa_wichuraiana Rw0G019050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 2 cut(s) 10, 86
AhlI ACTAGT 1 cut(s) 248
AluBI AGCT 2 cut(s) 38, 79
AluI AGCT 2 cut(s) 38, 79
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 431
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 54, 142
ApoI RAATTY 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 217
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 41, 129
BccI CCATC 2 cut(s) 224, 407
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 431
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 55, 143
BlsI GCNGC 2 cut(s) 56, 144
Bme1390I CCNGG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 48, 361
Bse1I ACTGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 48, 361
BseGI GGATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 374, 432
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 41, 129
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 361
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 375, 433
BspLI GGNNCC 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 48, 361
BssT1I CCWWGG 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 5 cut(s) 95, 261, 327, 383, 441
BstDSI CCRYGG 2 cut(s) 48, 361
BstF5I GGATG 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 41, 129
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 48, 361
BtsCI GGATG 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 32, 215, 362
CviJI RGCY 8 cut(s) 5, 38, 54, 71, 79, 155, 240, 350
CviKI_1 RGCY 8 cut(s) 5, 38, 54, 71, 79, 155, 240, 350
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 5 cut(s) 95, 261, 327, 383, 441
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 3 cut(s) 35, 218, 365
FaiI YATR 9 cut(s) 33, 163, 165, 175, 184, 201, 216, 237, 363
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 3 cut(s) 31, 214, 361
Fnu4HI GCNGC 2 cut(s) 55, 143
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 55, 143
FspBI CTAG 1 cut(s) 249
GluI GCNGC 2 cut(s) 55, 143
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 299
Hin1II CATG 3 cut(s) 35, 218, 365
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 16
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 3 cut(s) 246, 282, 295
Hpy188I TCNGA 3 cut(s) 21, 63, 384
Hpy8I GTNNAC 3 cut(s) 246, 282, 295
HpyAV CCTTC 1 cut(s) 58
HpyF3I CTNAG 5 cut(s) 95, 261, 327, 383, 441
Hsp92II CATG 3 cut(s) 35, 218, 365
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 5 cut(s) 26, 116, 312, 323, 332
Lsp1109I GCAGC 2 cut(s) 41, 129
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 223, 322
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 275, 390, 418
MnlI CCTC 2 cut(s) 136, 378
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 299
NcoI CCATGG 1 cut(s) 361
NlaIII CATG 3 cut(s) 35, 218, 365
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 218
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 56, 144
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 2 cut(s) 55, 143
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 15, 40, 81, 128, 267
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 213
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 3 cut(s) 275, 390, 418
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 361
TasI AATT 3 cut(s) 275, 390, 418
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 54, 142
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 48
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 218
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.