Rmu_sc0008949.1_g000006

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008949.1
OG0021613
Physical Location & Seq
Reverse (-)
48729 .. 49310
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008949.1_g000006.1.cds

Sequence Viewer

Length: 582 bp
atggctttgaacctgattcggattgcttcctatgaagctgaaaaccccgtgggctgctctctaaaggaggcctttgagctccttgaaccaaaactaagacccccattggcaataacaatcccaaccccacaggaatacttgctgctcaacaaggctattttgtatggggttctatgcgaaacccattttgccaaaacacatattaagcatttacatgccattgtcatcgatgggtatggcttgtttgctagtttgattgctacggttgtgaatgaattgtacacgaaacttgttgacccagtgaaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttgtggttgtgttttgagatcgtgaccatttttttgaccaaatgggattctctcttggaagtagaaccaatgattttgaccagtggattgtatacatatcttcggctagtagatgacagcggcgtactgcaccttggcgacaaagtgtgtgtgaaaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

193

Amino Acids

21.57

Weight (kDa)

5.46

Isoelectric Point (pI)

18.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021613)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004659.1_g000001 Rmu_sc0008949.1_g000006 Rmu_ssc0000018.1_g000052
rosa_samantha Rh2AG326600
rosa_wichuraiana Rw0G019050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 512
AciI CCGC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 2 cut(s) 281, 546
AgsI TTSAA 2 cut(s) 10, 86
AluBI AGCT 2 cut(s) 38, 79
AluI AGCT 2 cut(s) 38, 79
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 54, 142
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 41, 129
BccI CCATC 2 cut(s) 224, 407
BfaI CTAG 2 cut(s) 249, 527
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 3 cut(s) 55, 143, 541
BlsI GCNGC 3 cut(s) 56, 144, 542
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 48, 361, 553
Bse1I ACTGG 3 cut(s) 299, 310, 501
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 48, 361, 553
BseGI GGATG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 3 cut(s) 299, 310, 501
BseXI GCAGC 2 cut(s) 41, 129
BsgI GTGCAG 1 cut(s) 533
BshFI GGCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 81
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 1 cut(s) 540
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 375
BspDI ATCGAT 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 3 cut(s) 299, 310, 501
BssECI CCNNGG 3 cut(s) 48, 361, 553
BssMI GATC 1 cut(s) 438
BssNAI GTATAC 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 361, 553
Bst1107I GTATAC 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 95, 327, 383
BstDSI CCRYGG 2 cut(s) 48, 361
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 1 cut(s) 441
BstMBI GATC 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 41, 129
BstZ17I GTATAC 1 cut(s) 513
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 48, 361
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 306, 508
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 2 cut(s) 280, 545
CviAII CATG 2 cut(s) 215, 362
CviJI RGCY 9 cut(s) 5, 38, 54, 71, 79, 155, 240, 350, 526
CviKI_1 RGCY 9 cut(s) 5, 38, 54, 71, 79, 155, 240, 350, 526
CviQI GTAC 2 cut(s) 280, 545
DdeI CTNAG 3 cut(s) 95, 327, 383
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 361, 553
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoT14I CCWWGG 2 cut(s) 361, 553
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 2 cut(s) 361, 553
FaeI CATG 2 cut(s) 218, 365
FaiI YATR 9 cut(s) 33, 165, 175, 201, 216, 237, 363, 513, 517
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 2 cut(s) 214, 361
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 3 cut(s) 55, 143, 541
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 55, 143, 541
FspBI CTAG 2 cut(s) 249, 527
GluI GCNGC 3 cut(s) 55, 143, 541
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 2 cut(s) 218, 365
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 16, 467
Hpy166II GTNNAC 3 cut(s) 282, 295, 513
Hpy188I TCNGA 2 cut(s) 21, 384
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 3 cut(s) 282, 295, 513
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 550
HpyF3I CTNAG 3 cut(s) 95, 327, 383
Hsp92II CATG 2 cut(s) 218, 365
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 6 cut(s) 26, 116, 312, 323, 332, 514
Lsp1109I GCAGC 2 cut(s) 41, 129
LweI GCATC 1 cut(s) 366
MaeI CTAG 2 cut(s) 249, 527
MaeIII GTNAC 2 cut(s) 322, 442
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 275, 390, 418
MnlI CCTC 2 cut(s) 61, 378
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 540
NcoI CCATGG 1 cut(s) 361
NdeII GATC 1 cut(s) 438
NlaIII CATG 2 cut(s) 218, 365
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 218
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 2 cut(s) 16, 467
PkrI GCNGC 3 cut(s) 56, 144, 542
Psp124BI GAGCTC 1 cut(s) 81
RsaI GTAC 2 cut(s) 281, 546
RsaNI GTAC 2 cut(s) 280, 545
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 55, 143, 541
Sau3AI GATC 1 cut(s) 438
SduI GDGCHC 1 cut(s) 81
SetI ASST 4 cut(s) 15, 40, 81, 555
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 3 cut(s) 275, 390, 418
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 1 cut(s) 540
SspMI CTAG 2 cut(s) 249, 527
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 71
StyI CCWWGG 2 cut(s) 361, 553
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 275, 390, 418
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 2 cut(s) 16, 467
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 306, 508
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 54, 142
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 48, 288
TspRI CASTG 2 cut(s) 306, 508
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 2 cut(s) 249, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.