Rh2AG326600

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0021613
Physical Location & Seq
Forward (+)
46917153 .. 46917689
537 bp
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UTR
Exon/CDS
Intron
Rh2AG326600.1

Sequence Viewer

Length: 537 bp
ATGGCTTTGAACCTGATTCAGATTGCTTCCTATGAAGCTGAAAACCCTGTGGGCTGCTCTCTGAAGGAGGCCTTTGAGCTCCTTGAACCAAAACTAAGACCCCCATTGGCAATAACAATCCCAACCCCACAGGAATACTTGCTGCTCAACAAGGCTATTTTGTATGGAGTTCTATGCGAAACCCATTTTGCCAAAACACATATTAAGCATTTACATGCCATTGTCACTGATGGGTATGGCTTGTTTGCTAGTTTGATTGATAAGGTTGTGAATGAATTGTACACGAAACTTGTTGACCTGGTGAAGTGCCAGTTGATTTGGGTTACTAAGGAGATGATTGATGTTCAGGCTGTAGGCATCCATGGTTTGTTGGTTTGTTTTCTTAGGCAAATTGTTGGTGGGGATTTTAGTGATGGAAATTTGTGGTTGTGTTTTGAGATTGTGAGCATTTTTTTTGACCAAATGGGATTCTCTCTTGGAAGTAGAACCAATGATTTTGACCAGTGGATTGTATACATATCTTCGGCTAGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

178

Amino Acids

19.94

Weight (kDa)

5.1

Isoelectric Point (pI)

18.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 156 2.3e-27 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021613)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004659.1_g000001 Rmu_sc0008949.1_g000006 Rmu_ssc0000018.1_g000052
rosa_samantha Rh2AG326600
rosa_wichuraiana Rw0G019050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 2 cut(s) 10, 86
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 3 cut(s) 38, 79, 534
AluI AGCT 3 cut(s) 38, 79, 534
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 54, 142
ApoI RAATTY 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 313
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 41, 129
BccI CCATC 2 cut(s) 224, 407
BciT130I CCWGG 1 cut(s) 299
BfaI CTAG 2 cut(s) 249, 528
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 55, 143
BlsI GCNGC 2 cut(s) 56, 144
Bme1390I CCNGG 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 310, 502
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 310, 502
BseXI GCAGC 2 cut(s) 41, 129
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 81
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 361
BspANI GGCC 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 310, 502
BssECI CCNNGG 1 cut(s) 361
BssNAI GTATAC 1 cut(s) 514
BssT1I CCWWGG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 95, 327, 383
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 357
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 41, 129
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 225, 509
CsiI ACCWGGT 1 cut(s) 297
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 215, 362
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 3 cut(s) 95, 327, 383
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 218, 365
FaiI YATR 9 cut(s) 33, 165, 175, 201, 216, 237, 363, 514, 518
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 2 cut(s) 214, 361
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 55, 143
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 55, 143
FspBI CTAG 2 cut(s) 249, 528
GluI GCNGC 2 cut(s) 55, 143
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 2 cut(s) 218, 365
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 16, 468
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 282, 295, 514
Hpy188I TCNGA 2 cut(s) 21, 63
Hpy8I GTNNAC 3 cut(s) 282, 295, 514
HpyAV CCTTC 1 cut(s) 58
HpyF3I CTNAG 3 cut(s) 95, 327, 383
Hsp92II CATG 2 cut(s) 218, 365
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 8 cut(s) 26, 60, 116, 284, 311, 323, 332, 515
Lsp1109I GCAGC 2 cut(s) 41, 129
LweI GCATC 1 cut(s) 366
MabI ACCWGGT 1 cut(s) 297
MaeI CTAG 2 cut(s) 249, 528
MaeIII GTNAC 2 cut(s) 223, 322
MboII GAAGA 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 275, 390, 418
MnlI CCTC 1 cut(s) 61
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
NcoI CCATGG 1 cut(s) 361
NlaIII CATG 2 cut(s) 218, 365
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 218
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 2 cut(s) 16, 468
PkrI GCNGC 2 cut(s) 56, 144
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 2 cut(s) 55, 143
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 81
SetI ASST 6 cut(s) 15, 40, 81, 267, 300, 536
SexAI ACCWGGT 1 cut(s) 297
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 3 cut(s) 275, 390, 418
SseBI AGGCCT 1 cut(s) 71
SspMI CTAG 2 cut(s) 249, 528
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 361
TasI AATT 3 cut(s) 275, 390, 418
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 2 cut(s) 16, 468
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 232, 509
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 54, 142
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 48, 288
TspRI CASTG 2 cut(s) 232, 509
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 2 cut(s) 249, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.