Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004842.1

Orthogroup ID

OG0025587

Physical Location & Seq

Genomic Coordinates Reverse (-)

10798 .. 11118

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004842.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ctggcggattctagagaacaatctccccaactctatctacgtgcgtggattctcatattagtcatcgtcggcaccaccgggactcactaccacgacgtgctcttcttcttcgatatcaacttccagtcagattacccgacccggtcgtccaatgtgcattatcgctcctacgagttacgagtcaacctaaatctttacgagctggtacatctgtgtgagcctgctcaacacctggaccggaaagaagagggagaagtgggaccctgctcagtttaccgccctccaggttcttgtctcgatccaggccctcattttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

106

Amino Acids

12.28

Weight (kDa)

5.4

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025587)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004842.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231210
rosa_samantha	Rh7AG401700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	71
AciI	CCGC	2 cut(s)	5, 277
AclWI	GGATC	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	317
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	3 cut(s)	231, 283, 301
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	235, 260, 305
AsuC2I	CCSGG	2 cut(s)	79, 142
AvaII	GGWCC	2 cut(s)	235, 260
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	102
BciT130I	CCWGG	3 cut(s)	233, 285, 303
BcnI	CCSGG	2 cut(s)	79, 142
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	12
Bme1390I	CCNGG	5 cut(s)	79, 142, 233, 285, 303
Bme18I	GGWCC	2 cut(s)	235, 260
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	235, 260, 305
BmiI	GGNNCC	3 cut(s)	73, 261, 262
BmrFI	CCNGG	5 cut(s)	79, 142, 233, 285, 303
BpmI	CTGGAG	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	79, 142
BsaAI	YACGTR	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	233, 285, 303
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	306
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	78, 142, 238
BslFI	GGGAC	2 cut(s)	94, 273
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	94, 273
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	5, 277
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	73, 261, 262
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	298
Bst2UI	CCWGG	3 cut(s)	233, 285, 303
Bst6I	CTCTTC	2 cut(s)	107, 240
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	146
BstNI	CCWGG	3 cut(s)	233, 285, 303
BstSCI	CCNGG	5 cut(s)	77, 140, 231, 283, 301
BsuRI	GGCC	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	235, 260, 305
Csp6I	GTAC	1 cut(s)	206
CviJI	RGCY	3 cut(s)	202, 220, 306
CviKI_1	RGCY	3 cut(s)	202, 220, 306
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraIII	CACNNNGTG	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	107, 240
EarI	CTCTTC	2 cut(s)	107, 240
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	235, 260
EcoO109I	RGGNCCY	2 cut(s)	260, 305
EcoRII	CCWGG	3 cut(s)	231, 283, 301
EcoRV	GATATC	1 cut(s)	115
FaiI	YATR	1 cut(s)	56
FaqI	GGGAC	2 cut(s)	94, 273
FspBI	CTAG	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	3 cut(s)	78, 142, 238
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	8, 49, 82, 180
HpaII	CCGG	3 cut(s)	78, 142, 238
Hpy166II	GTNNAC	2 cut(s)	184, 274
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	12, 296
Hpy8I	GTNNAC	2 cut(s)	184, 274
Hpy99I	CGWCG	2 cut(s)	71, 98
HpyCH4IV	ACGT	2 cut(s)	40, 96
HpyCH4V	TGCA	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	2 cut(s)	40, 96
KflI	GGGWCCC	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	298
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	2 cut(s)	40, 96
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	94, 97, 100, 257
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	76, 189
MnlI	CCTC	3 cut(s)	241, 291, 318
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	3 cut(s)	78, 142, 238
MspR9I	CCNGG	5 cut(s)	79, 142, 233, 285, 303
MvaI	CCWGG	3 cut(s)	233, 285, 303
NciI	CCSGG	2 cut(s)	79, 142
NdeII	GATC	1 cut(s)	298
NlaIV	GGNNCC	3 cut(s)	73, 261, 262
PciSI	GCTCTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	8, 49
PflFI	GACNNNGTC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	76, 188
PpsI	GAGTC	2 cut(s)	76, 188
Ppu21I	YACGTR	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	3 cut(s)	231, 283, 301
PspGI	CCWGG	3 cut(s)	231, 283, 301
PspN4I	GGNNCC	3 cut(s)	73, 261, 262
PspPI	GGNCC	3 cut(s)	235, 260, 305
PspPPI	RGGWCCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	3 cut(s)	235, 260, 305
SchI	GAGTC	2 cut(s)	76, 189
ScrFI	CCNGG	5 cut(s)	79, 142, 233, 285, 303
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	6 cut(s)	43, 99, 189, 204, 234, 289
SinI	GGWCC	2 cut(s)	235, 260
SmiMI	CAYNNNNRTG	1 cut(s)	213
SsiI	CCGC	2 cut(s)	5, 277
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	5 cut(s)	77, 140, 231, 283, 301
TaiI	ACGT	2 cut(s)	43, 99
TaqI	TCGA	2 cut(s)	111, 297
TfiI	GAWTC	2 cut(s)	8, 49
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	235, 260
XbaI	TCTAGA	1 cut(s)	11
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.