Rh7AG401700

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0025587
Physical Location & Seq
Forward (+)
52857350 .. 52871394
14045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG401700.1

Sequence Viewer

Length: 261 bp
ATGGAGAATGAAATTATTATCATCGTCGGCACCACCGGGACTCACTACCACGACGTGCTCTTCTTCTTCGATATCAACTTCCAGTCAGATTACCCGACCCGGTCGTCCAATGTGCATTATCGCTCCTACGAGTTACGAGTCAACCTAAATCTTTACGAGCTGGTACATCTGCGTGAGCCTGCTCAACACCTGGACCGGAAAGAAGAGGGAGAAGTGGGACCCTGCTCAGTTTACCGTCCTCCAGGTTGCTGTTCAACTTAG

Protein Analysis

86

Amino Acids

10.02

Weight (kDa)

5.38

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025587)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004842.1_g000003
rosa_roxburghii Rroxscaffold_3G00231210
rosa_samantha Rh7AG401700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AccB1I GGYRCC 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 255
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 2 cut(s) 189, 241
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 193, 218
AsuC2I CCSGG 2 cut(s) 37, 100
AvaII GGWCC 2 cut(s) 193, 218
BanI GGYRCC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 60
BciT130I CCWGG 2 cut(s) 191, 243
BcnI CCSGG 2 cut(s) 37, 100
Bme1390I CCNGG 4 cut(s) 37, 100, 191, 243
Bme18I GGWCC 2 cut(s) 193, 218
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 193, 218
BmiI GGNNCC 3 cut(s) 31, 219, 220
BmrFI CCNGG 4 cut(s) 37, 100, 191, 243
BpmI CTGGAG 1 cut(s) 225
BpuMI CCSGG 2 cut(s) 37, 100
BsaWI WCCGGW 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 191, 243
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 3 cut(s) 36, 100, 196
BslFI GGGAC 2 cut(s) 52, 231
BsmFI GGGAC 2 cut(s) 52, 231
Bsp1286I GDGCHC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 239
BspLI GGNNCC 3 cut(s) 31, 219, 220
BspQI GCTCTTC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 191, 243
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 65, 198
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 226, 258
BstMCI CGRYCG 1 cut(s) 104
BstNI CCWGG 2 cut(s) 191, 243
BstSCI CCNGG 4 cut(s) 35, 98, 189, 241
BtrI CACGTC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 193, 218
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 2 cut(s) 160, 178
CviKI_1 RGCY 2 cut(s) 160, 178
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 2 cut(s) 226, 258
DraIII CACNNNGTG 1 cut(s) 55
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 65, 198
EarI CTCTTC 2 cut(s) 65, 198
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 193, 218
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 189, 241
EcoRV GATATC 1 cut(s) 73
FaqI GGGAC 2 cut(s) 52, 231
GsuI CTGGAG 1 cut(s) 225
HapII CCGG 3 cut(s) 36, 100, 196
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 40, 138
HpaII CCGG 3 cut(s) 36, 100, 196
Hpy166II GTNNAC 2 cut(s) 142, 232
Hpy188I TCNGA 1 cut(s) 88
Hpy8I GTNNAC 2 cut(s) 142, 232
Hpy99I CGWCG 2 cut(s) 29, 56
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 226, 258
HpySE526I ACGT 1 cut(s) 54
KflI GGGWCCC 1 cut(s) 218
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 1 cut(s) 128
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 132
MboII GAAGA 4 cut(s) 52, 55, 58, 215
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 12
MlyI GAGTC 2 cut(s) 34, 147
MnlI CCTC 2 cut(s) 199, 249
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 3 cut(s) 36, 100, 196
MspR9I CCNGG 4 cut(s) 37, 100, 191, 243
MvaI CCWGG 2 cut(s) 191, 243
NciI CCSGG 2 cut(s) 37, 100
NlaIV GGNNCC 3 cut(s) 31, 219, 220
PciSI GCTCTTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 100
PleI GAGTC 2 cut(s) 34, 146
PpsI GAGTC 2 cut(s) 34, 146
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 189, 241
PspGI CCWGG 2 cut(s) 189, 241
PspN4I GGNNCC 3 cut(s) 31, 219, 220
PspPI GGNCC 2 cut(s) 193, 218
PspPPI RGGWCCY 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 100
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 65
Sau96I GGNCC 2 cut(s) 193, 218
SchI GAGTC 2 cut(s) 34, 147
ScrFI CCNGG 4 cut(s) 37, 100, 191, 243
SduI GDGCHC 1 cut(s) 60
SetI ASST 5 cut(s) 57, 147, 162, 192, 247
SinI GGWCC 2 cut(s) 193, 218
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 12
StyD4I CCNGG 4 cut(s) 35, 98, 189, 241
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 24
Tth111I GACNNNGTC 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 193, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.