Rroxscaffold_3G00231210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0025587
Physical Location & Seq
Reverse (-)
16205480 .. 16208746
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231210.1

Sequence Viewer

Length: 282 bp
ATGTGCATTACCGCTCCTACTAGTTACGAGTCAACTTTGAATCTTTACGAGCTGGTACATCTGCGTGAGCCTACTCAACACCTGGACCGGAAAGAAGAGGGAGAAGTGGGACCCTACTCGGTTCACCGTCCTCCGTGTTCTTGTTCGGATCCGGGCGTTCGTTTTGAACGAGAGCCGTATTTCAACGAACCGGATGCTAATTCATATGAACGGGACTCAAGTCACTCATGTGCTACTCTAGATAACACGCTTGACATGGATGATCTAAACACGAGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.64

Weight (kDa)

4.58

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025587)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004842.1_g000003
rosa_roxburghii Rroxscaffold_3G00231210
rosa_samantha Rh7AG401700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 143, 156
AfaI GTAC 1 cut(s) 57
AgsI TTSAA 3 cut(s) 40, 167, 184
AhlI ACTAGT 1 cut(s) 20
AjnI CCWGG 1 cut(s) 81
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AlwI GGATC 2 cut(s) 143, 156
AspS9I GGNCC 2 cut(s) 85, 110
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 2 cut(s) 85, 110
BamHI GGATCC 1 cut(s) 148
BauI CACGAG 1 cut(s) 271
BceAI ACGGC 1 cut(s) 160
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 1 cut(s) 83
BcnI CCSGG 1 cut(s) 153
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 2 cut(s) 21, 239
Bme1390I CCNGG 2 cut(s) 83, 153
Bme18I GGWCC 2 cut(s) 85, 110
BmgT120I GGNCC 2 cut(s) 85, 110
BmiI GGNNCC 3 cut(s) 111, 112, 150
BmrFI CCNGG 2 cut(s) 83, 153
BmsI GCATC 1 cut(s) 184
BoxI GACNNNNGTC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 153
BsaWI WCCGGW 2 cut(s) 87, 190
BseBI CCWGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 199, 265
BsiSI CCGG 3 cut(s) 88, 152, 191
BslFI GGGAC 2 cut(s) 123, 227
BsmFI GGGAC 2 cut(s) 123, 227
Bsp143I GATC 3 cut(s) 148, 262, 275
BspACI CCGC 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 111, 112, 150
BspPI GGATC 2 cut(s) 143, 156
BsrBI CCGCTC 1 cut(s) 14
BssMI GATC 3 cut(s) 148, 262, 275
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 90
BstF5I GGATG 2 cut(s) 199, 265
BstKTI GATC 3 cut(s) 151, 265, 278
BstMBI GATC 3 cut(s) 148, 262, 275
BstNI CCWGG 1 cut(s) 83
BstPAI GACNNNNGTC 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 81, 151
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BtsCI GGATG 2 cut(s) 199, 265
Cfr13I GGNCC 2 cut(s) 85, 110
Csp6I GTAC 1 cut(s) 56
CviAII CATG 2 cut(s) 228, 256
CviJI RGCY 3 cut(s) 52, 70, 175
CviKI_1 RGCY 3 cut(s) 52, 70, 175
CviQI GTAC 1 cut(s) 56
DpnI GATC 3 cut(s) 150, 264, 277
DpnII GATC 3 cut(s) 148, 262, 275
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 85, 110
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 231, 259
FaiI YATR 5 cut(s) 205, 207, 229, 257, 280
FaqI GGGAC 2 cut(s) 123, 227
FatI CATG 2 cut(s) 227, 255
FauNDI CATATG 1 cut(s) 205
FokI GGATG 2 cut(s) 206, 272
FspBI CTAG 2 cut(s) 21, 239
HapII CCGG 3 cut(s) 88, 152, 191
Hin1II CATG 2 cut(s) 231, 259
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 29, 40, 215
HpaII CCGG 3 cut(s) 88, 152, 191
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 33, 124
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 33, 124
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 6
Hsp92II CATG 2 cut(s) 231, 259
KflI GGGWCCC 1 cut(s) 110
Kzo9I GATC 3 cut(s) 148, 262, 275
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 38, 68, 95, 101, 165, 204
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 21, 239
MaeIII GTNAC 2 cut(s) 23, 221
MalI GATC 3 cut(s) 150, 264, 277
MbiI CCGCTC 1 cut(s) 14
MboI GATC 3 cut(s) 148, 262, 275
MboII GAAGA 1 cut(s) 107
MflI RGATCY 1 cut(s) 148
MluCI AATT 1 cut(s) 199
MlyI GAGTC 2 cut(s) 38, 209
MnlI CCTC 2 cut(s) 91, 141
MslI CAYNNNNRTG 2 cut(s) 63, 228
MspI CCGG 3 cut(s) 88, 152, 191
MspR9I CCNGG 2 cut(s) 83, 153
MvaI CCWGG 1 cut(s) 83
NciI CCSGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 205
NdeII GATC 3 cut(s) 148, 262, 275
NlaIII CATG 2 cut(s) 231, 259
NlaIV GGNNCC 3 cut(s) 111, 112, 150
NmuCI GTSAC 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 40
PleI GAGTC 2 cut(s) 37, 209
PpsI GAGTC 2 cut(s) 37, 209
PpuMI RGGWCCY 1 cut(s) 110
PshAI GACNNNNGTC 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 111, 112, 150
PspPI GGNCC 2 cut(s) 85, 110
PspPPI RGGWCCY 1 cut(s) 110
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 2 cut(s) 63, 228
Sau3AI GATC 3 cut(s) 148, 262, 275
Sau96I GGNCC 2 cut(s) 85, 110
SchI GAGTC 2 cut(s) 38, 209
ScrFI CCNGG 2 cut(s) 83, 153
SetI ASST 2 cut(s) 54, 84
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 2 cut(s) 85, 110
SmiMI CAYNNNNRTG 2 cut(s) 63, 228
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 1 cut(s) 199
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 21, 239
StyD4I CCNGG 2 cut(s) 81, 151
TaaI ACNGT 1 cut(s) 128
TasI AATT 1 cut(s) 199
TfiI GAWTC 1 cut(s) 40
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 192, 222
TspGWI ACGGA 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 85, 110
XbaI TCTAGA 1 cut(s) 238
XspI CTAG 2 cut(s) 21, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.