Rmu_sc0004848.1_g000006

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004848.1
OG0017332
Physical Location & Seq
Reverse (-)
32359 .. 34646
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
atggatgactactcagaggattggtgcttcgtctgcaaagatggtggtgttctaatgctttgcgaccatgaaggctgctccaaagtttatcatcctaaatgtgtgggaaggaagaattccttcctcaaaagcaagaagctctggacttgtagcaagcattcctgttatgtgtgctgtaacaatggatcaaccacctcagccgcaattagtttctcatgcctttgttgtccgtacgcattatgtgacccttgctgcacagcaagtactactactagtgctgctgagttttcactgctaagagggaaggataagtcgggcctttgcaatgactgtttagaagttgttaggcttgcagaagcaaactcggagtatggaccagatggagagaaactagacttcaaaaaccatgacacatttgaatgccgactcaaagagtattgggaattcataaagaaaaacgagggcctgactttaaatgatgtctattcctcaaatgttgggaaaaggaaaaggctagacgaatttttaggatgttcaaaacctctgcttcagttccataactatatgaaacctgatgcaaagaaactccggacatctgctgttggagatcatgggctgagagagatcaaaacagagagtgttgagagttggaaatttcagatagtttgtgctgattgtgcatgctcaaggcaccctctggatggtgcttttcatcaaagagttgagaatcttgttctttgggcagagagctggtgtgtttgggaggtagagcaatcaaagtggctttcccatggaattcacctcaagcaggtgcgttgtgattctgatcagaattatgctctggaaggcacattttgtggaagggatagcgaagattctttccagcatatgtgtatcaaagaaagagagccatatattatccgaaaactgattgaggtgattgaagtggccgtccccttgatccctatagttgtgcacctaagggatacaactatgcagaaactaggtgctgccgttcctgcaactgcatcatccatgggacggttggagaatgtgaccctcgcttactcaaatccctacttgcttacacctttttcatggagattgcctcaccaagtggctgtcggggaccaacttgtgtccagtgtaccagtgcccattagagccgaagccgcagctgggagcggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

396

Amino Acids

44.39

Weight (kDa)

6.36

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 8 - 53 1e-05 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19471
rosa_laevigata RLG00000023894 RLG00000023895
rosa_multiflora Rmu_sc0004848.1_g000006
rosa_roxburghii Rroxscaffold_6G00406840
rosa_rugosa Rorug03G0144000
rosa_samantha Rh3AG193700 Rh3AG193800 Rh3BG223500 Rh3BG223600 Rh3CG218400 Rh3CG218500 Rh3DG219500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 799
Acc36I ACCTGC 1 cut(s) 799
AccB1I GGYRCC 1 cut(s) 690
AccBSI CCGCTC 1 cut(s) 1185
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 3 cut(s) 201, 1173, 1185
AclWI GGATC 2 cut(s) 193, 955
AcoI YGGCCR 1 cut(s) 948
AcsI RAATTY 5 cut(s) 115, 443, 521, 653, 795
AcuI CTGAAG 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 1117
AfaI GTAC 3 cut(s) 233, 265, 1149
AfiI CCNNNNNNNGG 4 cut(s) 701, 808, 1041, 1179
AgsI TTSAA 4 cut(s) 400, 419, 537, 944
AhlI ACTAGT 1 cut(s) 272
AluBI AGCT 3 cut(s) 139, 750, 1178
AluI AGCT 3 cut(s) 139, 750, 1178
Alw21I GWGCWC 1 cut(s) 978
Alw44I GTGCAC 1 cut(s) 974
AlwI GGATC 2 cut(s) 193, 955
Aor13HI TCCGGA 1 cut(s) 588
AoxI GGCC 3 cut(s) 316, 463, 948
ApaLI GTGCAC 1 cut(s) 974
ApeKI GCWGC 5 cut(s) 75, 252, 278, 1010, 1175
ApoI RAATTY 5 cut(s) 115, 443, 521, 653, 795
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 4 cut(s) 316, 374, 463, 1129
AsuHPI GGTGA 3 cut(s) 791, 949, 1103
AvaII GGWCC 2 cut(s) 374, 1129
AxyI CCTNAGG 1 cut(s) 980
BaeGI GKGCMC 2 cut(s) 978, 1158
BanI GGYRCC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 978
BbvCI CCTCAGC 1 cut(s) 196
BbvI GCAGC 5 cut(s) 62, 239, 265, 997, 1187
BccI CCATC 3 cut(s) 35, 374, 695
BceAI ACGGC 2 cut(s) 935, 998
BciVI GTATCC 1 cut(s) 979
BclI TGATCA 1 cut(s) 826
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 4 cut(s) 273, 392, 515, 1004
BfmI CTRYAG 1 cut(s) 966
BfuAI ACCTGC 1 cut(s) 799
BfuI GTATCC 1 cut(s) 979
BisI GCNGC 8 cut(s) 76, 201, 253, 279, 1011, 1173, 1176, 1186
BlsI GCNGC 8 cut(s) 77, 202, 254, 280, 1012, 1174, 1177, 1187
BmcAI AGTACT 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 374, 1129
BmgT120I GGNCC 4 cut(s) 316, 374, 463, 1129
BmiI GGNNCC 2 cut(s) 692, 1130
BmsI GCATC 2 cut(s) 565, 1037
BplI GAGNNNNNCTC 2 cut(s) 1093, 1125
Bpu10I CCTNAGC 1 cut(s) 196
BpuEI CTTGAG 2 cut(s) 670, 788
BsaBI GATNNNNATC 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 790, 1035
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 4 cut(s) 701, 808, 1041, 1179
Bse1I ACTGG 2 cut(s) 1143, 1151
Bse21I CCTNAGG 1 cut(s) 980
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 825
BseAI TCCGGA 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 790, 1035
BseGI GGATG 5 cut(s) 10, 91, 536, 706, 1031
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 4 cut(s) 701, 808, 1041, 1179
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 4 cut(s) 27, 210, 273, 608
BseNI ACTGG 2 cut(s) 1143, 1151
BseSI GKGCMC 2 cut(s) 978, 1158
BseXI GCAGC 5 cut(s) 62, 239, 265, 997, 1187
BseYI CCCAGC 1 cut(s) 1178
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 3 cut(s) 318, 465, 950
BshNI GGYRCC 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 978
BsiSI CCGG 1 cut(s) 589
BsiWI CGTACG 1 cut(s) 231
BslFI GGGAC 3 cut(s) 938, 1053, 1142
BslI CCNNNNNNNGG 4 cut(s) 701, 808, 1041, 1179
BsmFI GGGAC 3 cut(s) 938, 1053, 1142
BsmI GAATGC 2 cut(s) 157, 425
BsnI GGCC 3 cut(s) 318, 465, 950
Bsp1286I GDGCHC 2 cut(s) 978, 1158
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 5 cut(s) 185, 607, 624, 826, 960
Bsp19I CCATGG 2 cut(s) 790, 1035
BspACI CCGC 3 cut(s) 201, 1173, 1185
BspANI GGCC 3 cut(s) 318, 465, 950
BspCNI CTCAG 4 cut(s) 26, 209, 274, 609
BspEI TCCGGA 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 692, 1130
BspMI ACCTGC 1 cut(s) 799
BspPI GGATC 2 cut(s) 193, 955
BspT107I GGYRCC 1 cut(s) 690
BsrBI CCGCTC 1 cut(s) 1185
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 2 cut(s) 1143, 1151
BssECI CCNNGG 2 cut(s) 790, 1035
BssMI GATC 5 cut(s) 185, 607, 624, 826, 960
BssT1I CCWWGG 2 cut(s) 790, 1035
Bst4CI ACNGT 2 cut(s) 332, 1044
BstC8I GCNNGC 3 cut(s) 155, 351, 682
BstDEI CTNAG 6 cut(s) 13, 196, 282, 296, 617, 980
BstDSI CCRYGG 2 cut(s) 790, 1035
BstENI CCTNNNNNAGG 1 cut(s) 806
BstF5I GGATG 5 cut(s) 10, 91, 536, 706, 1031
BstKTI GATC 5 cut(s) 188, 610, 627, 829, 963
BstMBI GATC 5 cut(s) 185, 607, 624, 826, 960
BstMWI GCNNNNNNNGC 4 cut(s) 33, 677, 1019, 1172
BstNSI RCATGY 1 cut(s) 684
BstSFI CTRYAG 1 cut(s) 966
BstSLI GKGCMC 2 cut(s) 978, 1158
BstV1I GCAGC 5 cut(s) 62, 239, 265, 997, 1187
Bsu36I CCTNAGG 1 cut(s) 980
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 3 cut(s) 318, 465, 950
BtgI CCRYGG 2 cut(s) 790, 1035
BtsCI GGATG 5 cut(s) 10, 91, 536, 706, 1031
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 3 cut(s) 290, 1150, 1158
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 3 cut(s) 155, 351, 682
Cfr13I GGNCC 4 cut(s) 316, 374, 463, 1129
Csp6I GTAC 3 cut(s) 232, 264, 1148
CspCI CAANNNNNGTGG 4 cut(s) 25, 60, 761, 796
CviAII CATG 8 cut(s) 68, 216, 407, 611, 681, 791, 1036, 1098
CviQI GTAC 3 cut(s) 232, 264, 1148
DdeI CTNAG 6 cut(s) 13, 196, 282, 296, 617, 980
DpnI GATC 5 cut(s) 187, 609, 626, 828, 962
DpnII GATC 5 cut(s) 185, 607, 624, 826, 960
DraI TTTAAA 1 cut(s) 474
DraIII CACNNNGTG 1 cut(s) 1117
EaeI YGGCCR 1 cut(s) 948
Eco130I CCWWGG 2 cut(s) 790, 1035
Eco47I GGWCC 2 cut(s) 374, 1129
Eco57I CTGAAG 1 cut(s) 533
Eco81I CCTNAGG 1 cut(s) 980
EcoNI CCTNNNNNAGG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 463
EcoRI GAATTC 3 cut(s) 115, 443, 795
EcoT14I CCWWGG 2 cut(s) 790, 1035
ErhI CCWWGG 2 cut(s) 790, 1035
FaeI CATG 8 cut(s) 71, 219, 410, 614, 684, 794, 1039, 1101
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 3 cut(s) 938, 1053, 1142
FatI CATG 8 cut(s) 67, 215, 406, 610, 680, 790, 1035, 1097
FauNDI CATATG 1 cut(s) 888
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 8 cut(s) 76, 201, 253, 279, 1011, 1173, 1176, 1186
FokI GGATG 5 cut(s) 17, 78, 543, 713, 1018
Fsp4HI GCNGC 8 cut(s) 76, 201, 253, 279, 1011, 1173, 1176, 1186
FspBI CTAG 4 cut(s) 273, 392, 515, 1004
GluI GCNGC 8 cut(s) 76, 201, 253, 279, 1011, 1173, 1176, 1186
GsaI CCCAGC 1 cut(s) 1182
HaeIII GGCC 3 cut(s) 318, 465, 950
HapII CCGG 1 cut(s) 589
Hin1II CATG 8 cut(s) 71, 219, 410, 614, 684, 794, 1039, 1101
HinfI GANTC 4 cut(s) 426, 727, 821, 875
HpaII CCGG 1 cut(s) 589
HphI GGTGA 3 cut(s) 791, 949, 1103
Hpy166II GTNNAC 2 cut(s) 976, 1148
Hpy188I TCNGA 6 cut(s) 16, 367, 660, 826, 831, 923
Hpy188III TCNNGA 4 cut(s) 142, 589, 698, 842
Hpy8I GTNNAC 2 cut(s) 976, 1148
HpyAV CCTTC 6 cut(s) 65, 102, 130, 298, 839, 855
HpyCH4III ACNGT 2 cut(s) 332, 1044
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 677, 1019, 1172
HpyF3I CTNAG 6 cut(s) 13, 196, 282, 296, 617, 980
Hsp92II CATG 8 cut(s) 71, 219, 410, 614, 684, 794, 1039, 1101
Kpn2I TCCGGA 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 185, 607, 624, 826, 960
LmnI GCTCC 2 cut(s) 83, 1182
Lsp1109I GCAGC 5 cut(s) 62, 239, 265, 997, 1187
LweI GCATC 2 cut(s) 565, 1037
MaeI CTAG 4 cut(s) 273, 392, 515, 1004
MaeIII GTNAC 3 cut(s) 176, 242, 1054
MalI GATC 5 cut(s) 187, 609, 626, 828, 962
MbiI CCGCTC 1 cut(s) 1185
MboI GATC 5 cut(s) 185, 607, 624, 826, 960
MboII GAAGA 2 cut(s) 124, 884
MhlI GDGCHC 2 cut(s) 978, 1158
MluCI AATT 7 cut(s) 115, 204, 443, 521, 653, 795, 832
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 3 cut(s) 583, 629, 1026
MroI TCCGGA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 1 cut(s) 418
MspA1I CMGCKG 1 cut(s) 1178
MspI CCGG 1 cut(s) 589
Mva1269I GAATGC 2 cut(s) 157, 425
MwoI GCNNNNNNNGC 4 cut(s) 33, 677, 1019, 1172
NcoI CCATGG 2 cut(s) 790, 1035
NdeI CATATG 1 cut(s) 888
NdeII GATC 5 cut(s) 185, 607, 624, 826, 960
NlaIII CATG 8 cut(s) 71, 219, 410, 614, 684, 794, 1039, 1101
NlaIV GGNNCC 2 cut(s) 692, 1130
NmuCI GTSAC 2 cut(s) 242, 1054
NspI RCATGY 1 cut(s) 684
PaeI GCATGC 1 cut(s) 684
PaqCI CACCTGC 1 cut(s) 799
PctI GAATGC 2 cut(s) 157, 425
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 3 cut(s) 727, 821, 875
Pfl23II CGTACG 1 cut(s) 231
PkrI GCNGC 8 cut(s) 77, 202, 254, 280, 1012, 1174, 1177, 1187
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 1178
PspLI CGTACG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 692, 1130
PspPI GGNCC 4 cut(s) 316, 374, 463, 1129
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 3 cut(s) 233, 265, 1149
RsaNI GTAC 3 cut(s) 232, 264, 1148
RseI CAYNNNNRTG 1 cut(s) 418
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 8 cut(s) 76, 201, 253, 279, 1011, 1173, 1176, 1186
Sau3AI GATC 5 cut(s) 185, 607, 624, 826, 960
Sau96I GGNCC 4 cut(s) 316, 374, 463, 1129
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 420
SduI GDGCHC 2 cut(s) 978, 1158
SfaNI GCATC 2 cut(s) 565, 1037
SfcI CTRYAG 1 cut(s) 966
SinI GGWCC 2 cut(s) 374, 1129
SmiMI CAYNNNNRTG 1 cut(s) 418
SmlI CTYRAG 2 cut(s) 685, 803
SmoI CTYRAG 2 cut(s) 685, 803
SpeI ACTAGT 1 cut(s) 272
SphI GCATGC 1 cut(s) 684
Sse9I AATT 7 cut(s) 115, 204, 443, 521, 653, 795, 832
SsiI CCGC 3 cut(s) 201, 1173, 1185
SspMI CTAG 4 cut(s) 273, 392, 515, 1004
StyI CCWWGG 2 cut(s) 790, 1035
TaaI ACNGT 2 cut(s) 332, 1044
TasI AATT 7 cut(s) 115, 204, 443, 521, 653, 795, 832
TatI WGTACW 1 cut(s) 263
TauI GCSGC 3 cut(s) 203, 1175, 1188
TfiI GAWTC 3 cut(s) 727, 821, 875
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 3 cut(s) 297, 1150, 1158
TseFI GTSAC 2 cut(s) 242, 1054
TseI GCWGC 5 cut(s) 75, 252, 278, 1010, 1175
Tsp45I GTSAC 2 cut(s) 242, 1054
TspDTI ATGAA 5 cut(s) 84, 436, 581, 701, 1086
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 3 cut(s) 297, 1150, 1158
VneI GTGCAC 1 cut(s) 974
VpaK11BI GGWCC 2 cut(s) 374, 1129
XagI CCTNNNNNAGG 1 cut(s) 806
XapI RAATTY 5 cut(s) 115, 443, 521, 653, 795
XceI RCATGY 1 cut(s) 684
XcmI CCANNNNNNNNNTGG 1 cut(s) 1042
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 4 cut(s) 273, 392, 515, 1004
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.