Rmu_sc0004888.1_g000051

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004888.1
OG0023108
Physical Location & Seq
Forward (+)
258669 .. 260765
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004888.1_g000051.1.cds

Sequence Viewer

Length: 282 bp
atgaaggtcaaggaggagtccgcctccaattggtcgcgtacctcacaacgcgccacccttgacaacgccgttagtcaccccaattcctcgtctccagtatgcctgtggaggaagaagagggttgctagctacaaggtgtacaatgtggaggggaagctgaaagggactcacaggaagagcttcaggaggctcaaggagacttgtggtctatggccggctgaactccgaagcggccggtgccccttgcttgaatcggatgggcatggaacctcacccatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

93

Amino Acids

10.5

Weight (kDa)

10.1

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023108)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004888.1_g000051 Rmu_sc0004888.1_g000055
rosa_rugosa Rorug02G0205500
rosa_samantha Rh2DG269200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AccII CGCG 2 cut(s) 37, 51
AciI CCGC 2 cut(s) 21, 231
AcoI YGGCCR 2 cut(s) 212, 232
AcuI CTGAAG 1 cut(s) 166
AfaI GTAC 2 cut(s) 40, 140
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 277
AluBI AGCT 3 cut(s) 129, 157, 180
AluI AGCT 3 cut(s) 129, 157, 180
Alw26I GTCTC 2 cut(s) 96, 191
AoxI GGCC 2 cut(s) 212, 232
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 68, 264
AsuNHI GCTAGC 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 237
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 96, 191
BfaI CTAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BmeRI GACNNNNNGTC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 239, 268
BmtI GCTAGC 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpmI CTGGAG 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 2 cut(s) 214, 234
Bse1I ACTGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 242
BseX3I CGGCCG 1 cut(s) 232
Bsh1236I CGCG 2 cut(s) 37, 51
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 214, 234
BshNI GGYRCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 215, 235
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 96, 191
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 2 cut(s) 214, 234
Bsp1286I GDGCHC 1 cut(s) 242
Bsp1407I TGTACA 1 cut(s) 138
BspACI CCGC 2 cut(s) 21, 231
BspANI GGCC 2 cut(s) 214, 234
BspFNI CGCG 2 cut(s) 37, 51
BspLI GGNNCC 2 cut(s) 239, 268
BspOI GCTAGC 1 cut(s) 129
BspQI GCTCTTC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 237
BsrFI RCCGGY 2 cut(s) 214, 234
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 2 cut(s) 214, 234
Bst6I CTCTTC 2 cut(s) 110, 170
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 127, 216
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 37, 51
BstHHI GCGC 1 cut(s) 53
BstMAI GTCTC 2 cut(s) 96, 191
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 2 cut(s) 37, 51
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 2 cut(s) 214, 234
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 127, 216
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 214, 234
Csp6I GTAC 2 cut(s) 39, 139
CviAII CATG 2 cut(s) 263, 277
CviJI RGCY 7 cut(s) 129, 157, 180, 190, 214, 218, 234
CviKI_1 RGCY 7 cut(s) 129, 157, 180, 190, 214, 218, 234
CviQI GTAC 2 cut(s) 39, 139
DriI GACNNNNNGTC 1 cut(s) 204
EaeI YGGCCR 2 cut(s) 212, 232
EagI CGGCCG 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 110, 170
Eam1105I GACNNNNNGTC 1 cut(s) 204
EarI CTCTTC 2 cut(s) 110, 170
EciI GGCGGA 1 cut(s) 10
EclXI CGGCCG 1 cut(s) 232
Eco52I CGGCCG 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 2 cut(s) 266, 280
FaiI YATR 4 cut(s) 100, 211, 264, 278
FaqI GGGAC 1 cut(s) 178
FatI CATG 2 cut(s) 262, 276
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 214, 234
HapII CCGG 2 cut(s) 215, 235
HhaI GCGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 266, 280
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 3 cut(s) 17, 166, 251
HpaII CCGG 2 cut(s) 215, 235
HphI GGTGA 2 cut(s) 68, 264
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 227, 256
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 266, 280
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 6 cut(s) 108, 116, 157, 169, 228, 248
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 3 cut(s) 124, 127, 187
MfeI CAATTG 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 28, 82
MlyI GAGTC 2 cut(s) 26, 160
MnlI CCTC 9 cut(s) 7, 34, 52, 97, 102, 111, 142, 180, 280
MroNI GCCGGC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 277
MspI CCGG 2 cut(s) 215, 235
MunI CAATTG 1 cut(s) 28
MvnI CGCG 2 cut(s) 37, 51
MwoI GCNNNNNNNGC 1 cut(s) 237
NaeI GCCGGC 1 cut(s) 216
NgoMIV GCCGGC 1 cut(s) 214
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 2 cut(s) 266, 280
NlaIV GGNNCC 2 cut(s) 239, 268
NmuCI GTSAC 1 cut(s) 74
OliI CACNNNNGTG 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 2 cut(s) 25, 160
PpsI GAGTC 2 cut(s) 25, 160
PspN4I GGNNCC 2 cut(s) 239, 268
RsaI GTAC 2 cut(s) 40, 140
RsaNI GTAC 2 cut(s) 39, 139
RseI CAYNNNNRTG 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 170
SatI GCNGC 1 cut(s) 232
SchI GAGTC 2 cut(s) 26, 160
SduI GDGCHC 1 cut(s) 242
SetI ASST 7 cut(s) 9, 44, 131, 138, 159, 182, 272
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 28, 82
SsiI CCGC 2 cut(s) 21, 231
SspMI CTAG 1 cut(s) 126
TasI AATT 2 cut(s) 28, 82
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 251
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.