Rh2DG269200

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0023108
Physical Location & Seq
Reverse (-)
29365809 .. 29369085
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG269200.1

Sequence Viewer

Length: 477 bp
ATGATGAAGAAGATGAAGCTGAAGGTCAAGGAGGAGTCCGCCTCCAGTCGGTCGCGTACCTCACAACGCGCCACCCGTGACAACGCCGTTAGTGACCTCAATTCCTCGTCTCCAGTATCCCTGTGGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACAATGTGGAGGGGAAGCTGAAAGGGACTCACAGGAAGAGCTTCAGGTGGCTCAAGGAGACTTGTGGTCTATGGCCGCTATTGTTTGCTGGAGCCTCAAATGGTTCCTTGTTGTCTGGAAAAGCTCTATGTAGAGTTGTTCCTCCTCTGTTTACTGAAGCTGCTGGCCTGCTGGGGTGTTTTTTTATCCTTATCCATGAAGGCATCTCACTTCATCTTTCAAGCTGCTGGGTTGTGTTGTCACTGTTTGACCATATAAGAGATTTTGTAGTTGCTTTTCCTTCCTATAGTTGGGTGTGCACCGGCAAAGTGGCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

158

Amino Acids

17.63

Weight (kDa)

9.99

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 43 - 74 2.9e-16 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023108)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004888.1_g000051 Rmu_sc0004888.1_g000055
rosa_rugosa Rorug02G0205500
rosa_samantha Rh2DG269200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 55, 69
AciI CCGC 2 cut(s) 39, 233
AcoI YGGCCR 1 cut(s) 230
AcuI CTGAAG 3 cut(s) 41, 184, 333
AfaI GTAC 2 cut(s) 58, 158
AfiI CCNNNNNNNGG 3 cut(s) 48, 126, 447
AgsI TTSAA 1 cut(s) 378
AhdI GACNNNNNGTC 1 cut(s) 222
AluBI AGCT 7 cut(s) 19, 147, 175, 198, 281, 317, 381
AluI AGCT 7 cut(s) 19, 147, 175, 198, 281, 317, 381
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 2 cut(s) 114, 209
Alw44I GTGCAC 1 cut(s) 454
AoxI GGCC 2 cut(s) 230, 322
ApaLI GTGCAC 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 317, 381
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 2 cut(s) 304, 368
BceAI ACGGC 1 cut(s) 71
BciVI GTATCC 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 114, 209
BfaI CTAG 2 cut(s) 144, 475
BfmI CTRYAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 3 cut(s) 233, 318, 382
BlsI GCNGC 3 cut(s) 234, 319, 383
BmeRI GACNNNNNGTC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 250, 262
BmsI GCATC 1 cut(s) 369
BmtI GCTAGC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 3 cut(s) 28, 96, 267
BpuEI CTTGAG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 126, 447
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 2 cut(s) 45, 113
BseLI CCNNNNNNNGG 3 cut(s) 48, 126, 447
BseNI ACTGG 2 cut(s) 45, 113
BseRI GAGGAG 2 cut(s) 47, 291
BseSI GKGCMC 1 cut(s) 458
BseXI GCAGC 2 cut(s) 304, 368
BseYI CCCAGC 2 cut(s) 328, 384
Bsh1236I CGCG 2 cut(s) 55, 69
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 2 cut(s) 232, 324
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 3 cut(s) 48, 126, 447
BsmAI GTCTC 2 cut(s) 114, 209
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 2 cut(s) 232, 324
Bsp1286I GDGCHC 1 cut(s) 458
Bsp1407I TGTACA 1 cut(s) 156
BspACI CCGC 2 cut(s) 39, 233
BspANI GGCC 2 cut(s) 232, 324
BspFNI CGCG 2 cut(s) 55, 69
BspLI GGNNCC 2 cut(s) 250, 262
BspOI GCTAGC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 2 cut(s) 45, 113
BssAI RCCGGY 1 cut(s) 458
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 2 cut(s) 128, 188
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 145, 322, 326
BstFNI CGCG 2 cut(s) 55, 69
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 2 cut(s) 114, 209
BstMCI CGRYCG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 458
BstUI CGCG 2 cut(s) 55, 69
BstV1I GCAGC 2 cut(s) 304, 368
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 2 cut(s) 232, 324
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 3 cut(s) 145, 322, 326
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 458
Csp6I GTAC 2 cut(s) 57, 157
CviAII CATG 1 cut(s) 353
CviQI GTAC 2 cut(s) 57, 157
DriI GACNNNNNGTC 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 128, 188
Eam1105I GACNNNNNGTC 1 cut(s) 222
EarI CTCTTC 2 cut(s) 128, 188
EciI GGCGGA 1 cut(s) 28
Eco57I CTGAAG 3 cut(s) 41, 184, 333
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 1 cut(s) 356
FaiI YATR 6 cut(s) 229, 286, 354, 411, 413, 444
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 233, 318, 382
Fsp4HI GCNGC 3 cut(s) 233, 318, 382
FspBI CTAG 2 cut(s) 144, 475
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 233, 318, 382
GsaI CCCAGC 2 cut(s) 332, 388
GsuI CTGGAG 3 cut(s) 28, 96, 267
HaeIII GGCC 2 cut(s) 232, 324
HapII CCGG 1 cut(s) 459
HhaI GCGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 35, 184
HpaII CCGG 1 cut(s) 459
Hpy166II GTNNAC 3 cut(s) 157, 309, 456
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 3 cut(s) 157, 309, 456
HpyAV CCTTC 3 cut(s) 16, 350, 447
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4V TGCA 1 cut(s) 456
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 1 cut(s) 69
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 304, 368
LweI GCATC 1 cut(s) 369
MaeI CTAG 2 cut(s) 144, 475
MaeIII GTNAC 3 cut(s) 77, 92, 396
MboII GAAGA 5 cut(s) 19, 22, 142, 145, 205
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 1 cut(s) 100
MlyI GAGTC 2 cut(s) 44, 178
MroXI GAANNNNTTC 1 cut(s) 197
MspI CCGG 1 cut(s) 459
MvnI CGCG 2 cut(s) 55, 69
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 2 cut(s) 250, 262
NmuCI GTSAC 3 cut(s) 77, 92, 396
PciSI GCTCTTC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 234, 319, 383
PleI GAGTC 2 cut(s) 43, 178
PpsI GAGTC 2 cut(s) 43, 178
PspFI CCCAGC 2 cut(s) 328, 384
PspN4I GGNNCC 2 cut(s) 250, 262
RsaI GTAC 2 cut(s) 58, 158
RsaNI GTAC 2 cut(s) 57, 157
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 3 cut(s) 233, 318, 382
SchI GAGTC 2 cut(s) 44, 178
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 100
SsiI CCGC 2 cut(s) 39, 233
SspMI CTAG 2 cut(s) 144, 475
TaaI ACNGT 1 cut(s) 402
TaqII GACCGA 1 cut(s) 39
TasI AATT 1 cut(s) 100
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 235
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 3 cut(s) 77, 92, 396
TseI GCWGC 2 cut(s) 317, 381
Tsp45I GTSAC 3 cut(s) 77, 92, 396
TspDTI ATGAA 4 cut(s) 20, 29, 359, 369
TspRI CASTG 1 cut(s) 405
VneI GTGCAC 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 144, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.