Rorug02G0205500

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0023108
Physical Location & Seq
Reverse (-)
19274321 .. 19275575
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0205500.1

Sequence Viewer

Length: 945 bp
ATGGCCAGAAACAGCTCTCAGGCGACTGTCAACAAAAACCTCGTGTGCTTCTCCATCGCCGCTTATGCCAAAATCCTCATCAACCACTTGAAATCCTCTAACATCCCAGTTGAAAGGGGCCTCACCGACGCGGAGCTCGCATCGATTGAGGCCACCTTCAGTTTCACTTTCCCACCGGACCTCCGGCCCATTCTCCAAGAGGGGCTCCCTGTTGGGCCGGGATTCCTGAACTGGCGGGCATCCTCGGCCCAACAGCTCAACATCCTCCTCAACCTCCCGGCCCTCAGCCTCCTCAAGCAAGTCTCCGAGGGAAGCCTCTGGTGTCCGAGTTGGGGTCCGAGGCCCGACCGCGGCGGAGTCAAGGCGGGGTTGGAGAAAGTCAAAGCTCTGTTGAGGAAAGCGCCGGTTTTGGTTCCGGTATATAGGAACTGTTACATTCCCTGCGAGCCGAATTTGGCGGGAAATCCAGTGTTTTATATAGACTCCCAGAGCGTGAGGGTTCTGAGTTTCGACGTCACAGGGTTTTTCAGGGAGTTTGGAATGGCGCACGCGCCGGCGTGGGCTCCGAAGGAGGCGAGGAGGTTGGAGTTTTGGAGCGACGTGGCGGCGGGTGGGGCCACGCGCCGGTGGTGGAGCGGGAAGCTGGGTGGCGGGTGCTTGGATGAGGTGTGCAGGAGGCTGAGGGAGGGAGGGTGGAAGGAGGAGGAGGTTAGGGAGATGATGATGATGGACGGTTGTGGTGGAGAAATGGAGTGTGGGACTCAGGTGATCGGGCGGTGGAGGGAGGAGGATGTGGGGTTGTTGTCGTTGGTTTTGTTGCGTGGGGGATGGGCCAGGGAAGATGTGGTGTACTCGCTTGGTCTTCATGACCAGAACATGATAGGGGAGAACGGGGTTGTTGATGAGAACGTAATAACGTATTTAGAGGGTCAGCTTTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

314

Amino Acids

34.7

Weight (kDa)

5.8

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023108)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004888.1_g000051 Rmu_sc0004888.1_g000055
rosa_rugosa Rorug02G0205500
rosa_samantha Rh2DG269200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
AccBSI CCGCTC 1 cut(s) 636
AccII CGCG 4 cut(s) 131, 351, 551, 622
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 1 cut(s) 851
AfiI CCNNNNNNNGG 3 cut(s) 332, 350, 624
AgsI TTSAA 2 cut(s) 91, 113
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 1 cut(s) 833
AluBI AGCT 6 cut(s) 15, 136, 256, 386, 643, 934
AluI AGCT 6 cut(s) 15, 136, 256, 386, 643, 934
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 4 cut(s) 403, 547, 553, 624
AsuC2I CCSGG 2 cut(s) 219, 278
AsuHPI GGTGA 2 cut(s) 115, 778
AvaII GGWCC 2 cut(s) 178, 335
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 138, 207, 565
BauI CACGAG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 2 cut(s) 284, 680
BccI CCATC 3 cut(s) 62, 721, 822
BciT130I CCWGG 1 cut(s) 835
BcnI CCSGG 2 cut(s) 219, 278
BcoDI GTCTC 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 404
BisI GCNGC 3 cut(s) 60, 352, 606
BlsI GCNGC 3 cut(s) 61, 353, 607
Bme1390I CCNGG 3 cut(s) 219, 278, 835
Bme18I GGWCC 2 cut(s) 178, 335
BmgBI CACGTC 1 cut(s) 601
BmiI GGNNCC 6 cut(s) 119, 206, 336, 414, 564, 616
BmrFI CCNGG 3 cut(s) 219, 278, 835
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 149, 248
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 854
Bpu10I CCTNAGC 2 cut(s) 284, 680
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 2 cut(s) 219, 278
Bsa29I ATCGAT 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 5 cut(s) 243, 306, 338, 349, 834
BsaWI WCCGGW 2 cut(s) 175, 415
BsaXI ACNNNNNCTCC 4 cut(s) 165, 195, 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 350, 624
Bse118I RCCGGY 3 cut(s) 403, 553, 624
Bse1I ACTGG 3 cut(s) 107, 236, 467
BseBI CCWGG 1 cut(s) 835
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 5 cut(s) 243, 306, 338, 349, 834
BseGI GGATG 6 cut(s) 102, 239, 261, 667, 796, 833
BseLI CCNNNNNNNGG 3 cut(s) 332, 350, 624
BseMII CTCAG 5 cut(s) 32, 298, 494, 671, 776
BseNI ACTGG 3 cut(s) 107, 236, 467
BseRI GAGGAG 6 cut(s) 257, 281, 592, 716, 719, 800
BseYI CCCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 691
Bsh1236I CGCG 4 cut(s) 131, 351, 551, 622
Bsh1285I CGRYCG 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 8 cut(s) 176, 184, 218, 278, 404, 416, 554, 625
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 3 cut(s) 332, 350, 624
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 772
Bsp1286I GDGCHC 3 cut(s) 138, 207, 565
Bsp143I GATC 1 cut(s) 768
BspCNI CTCAG 5 cut(s) 31, 297, 495, 672, 775
BspDI ATCGAT 1 cut(s) 143
BspFNI CGCG 4 cut(s) 131, 351, 551, 622
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 6 cut(s) 119, 206, 336, 414, 564, 616
BsrBI CCGCTC 1 cut(s) 636
BsrFI RCCGGY 3 cut(s) 403, 553, 624
BsrI ACTGG 3 cut(s) 107, 236, 467
BssAI RCCGGY 3 cut(s) 403, 553, 624
BssECI CCNNGG 5 cut(s) 243, 306, 338, 349, 834
BssMI GATC 1 cut(s) 768
BssNI GRCGYC 1 cut(s) 513
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 3 cut(s) 28, 431, 734
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
BstDEI CTNAG 5 cut(s) 18, 284, 503, 680, 762
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 6 cut(s) 102, 239, 261, 667, 796, 833
BstFNI CGCG 4 cut(s) 131, 351, 551, 622
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 4 cut(s) 403, 547, 553, 624
BstKTI GATC 1 cut(s) 771
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 768
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 65, 137, 245, 614
BstNI CCWGG 1 cut(s) 835
BstSCI CCNGG 3 cut(s) 217, 276, 833
BstUI CGCG 4 cut(s) 131, 351, 551, 622
BstV2I GAAGAC 1 cut(s) 854
Bsu15I ATCGAT 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 6 cut(s) 102, 239, 261, 667, 796, 833
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 5 cut(s) 138, 237, 446, 549, 555
CciI TCATGA 1 cut(s) 865
CfoI GCGC 4 cut(s) 403, 547, 553, 624
Cfr10I RCCGGY 3 cut(s) 403, 553, 624
Cfr42I CCGCGG 1 cut(s) 352
ClaI ATCGAT 1 cut(s) 143
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 850
CviAII CATG 2 cut(s) 866, 877
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 5 cut(s) 18, 284, 503, 680, 762
DpnI GATC 1 cut(s) 770
DpnII GATC 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 3 cut(s) 138, 207, 565
Eco47I GGWCC 2 cut(s) 178, 335
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 833
EcoT38I GRGCYC 3 cut(s) 138, 207, 565
FaeI CATG 2 cut(s) 869, 880
FaiI YATR 7 cut(s) 66, 421, 423, 477, 479, 867, 878
FaqI GGGAC 1 cut(s) 772
FatI CATG 2 cut(s) 865, 876
FauI CCCGC 6 cut(s) 228, 358, 451, 601, 629, 644
Fnu4HI GCNGC 3 cut(s) 60, 352, 606
FokI GGATG 6 cut(s) 89, 226, 248, 674, 803, 840
FriOI GRGCYC 3 cut(s) 138, 207, 565
Fsp4HI GCNGC 3 cut(s) 60, 352, 606
GlaI GCGC 4 cut(s) 402, 546, 552, 623
GluI GCNGC 3 cut(s) 60, 352, 606
GsaI CCCAGC 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 404
HapII CCGG 8 cut(s) 176, 184, 218, 278, 404, 416, 554, 625
HgaI GACGC 1 cut(s) 137
HhaI GCGC 4 cut(s) 403, 547, 553, 624
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 2 cut(s) 869, 880
Hin6I GCGC 4 cut(s) 401, 545, 551, 622
HinP1I GCGC 4 cut(s) 401, 545, 551, 622
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 4 cut(s) 222, 357, 482, 760
HpaII CCGG 8 cut(s) 176, 184, 218, 278, 404, 416, 554, 625
HphI GGTGA 2 cut(s) 115, 778
Hpy166II GTNNAC 2 cut(s) 31, 850
Hpy188I TCNGA 5 cut(s) 307, 327, 339, 504, 567
Hpy188III TCNNGA 2 cut(s) 226, 866
Hpy8I GTNNAC 2 cut(s) 31, 850
Hpy99I CGWCG 3 cut(s) 131, 515, 602
HpyAV CCTTC 3 cut(s) 166, 562, 691
HpyCH4III ACNGT 3 cut(s) 28, 431, 734
HpyCH4IV ACGT 4 cut(s) 513, 600, 909, 917
HpyCH4V TGCA 1 cut(s) 672
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 137, 245, 614
HpyF3I CTNAG 5 cut(s) 18, 284, 503, 680, 762
HpySE526I ACGT 4 cut(s) 513, 600, 909, 917
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 2 cut(s) 869, 880
HspAI GCGC 4 cut(s) 401, 545, 551, 622
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
KspI CCGCGG 1 cut(s) 352
Kzo9I GATC 1 cut(s) 768
LmnI GCTCC 5 cut(s) 133, 210, 568, 594, 633
LweI GCATC 2 cut(s) 149, 248
MaeII ACGT 4 cut(s) 513, 600, 909, 917
MaeIII GTNAC 2 cut(s) 431, 514
MalI GATC 1 cut(s) 770
MbiI CCGCTC 1 cut(s) 636
MboI GATC 1 cut(s) 768
MboII GAAGA 2 cut(s) 851, 854
MhlI GDGCHC 3 cut(s) 138, 207, 565
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 451, 940
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 366, 476, 754
MmeI TCCRAC 2 cut(s) 351, 564
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 553
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 8 cut(s) 176, 184, 218, 278, 404, 416, 554, 625
MspR9I CCNGG 3 cut(s) 219, 278, 835
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 4 cut(s) 131, 351, 551, 622
MwoI GCNNNNNNNGC 4 cut(s) 65, 137, 245, 614
NaeI GCCGGC 1 cut(s) 555
NciI CCSGG 2 cut(s) 219, 278
NdeII GATC 1 cut(s) 768
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 869, 880
NlaIV GGNNCC 6 cut(s) 119, 206, 336, 414, 564, 616
NmeAIII GCCGAG 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 1 cut(s) 865
PdiI GCCGGC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 61, 353, 607
PleI GAGTC 3 cut(s) 365, 476, 754
PpsI GAGTC 3 cut(s) 365, 476, 754
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 6 cut(s) 119, 206, 336, 414, 564, 616
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
SacI GAGCTC 1 cut(s) 138
SacII CCGCGG 1 cut(s) 352
SatI GCNGC 3 cut(s) 60, 352, 606
Sau3AI GATC 1 cut(s) 768
SchI GAGTC 3 cut(s) 366, 476, 754
ScrFI CCNGG 3 cut(s) 219, 278, 835
SduI GDGCHC 3 cut(s) 138, 207, 565
SfaNI GCATC 2 cut(s) 149, 248
Sfr303I CCGCGG 1 cut(s) 352
SgrAI CRCCGGYG 2 cut(s) 553, 624
SgrBI CCGCGG 1 cut(s) 352
SinI GGWCC 2 cut(s) 178, 335
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 451, 940
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 217, 276, 833
TaaI ACNGT 3 cut(s) 28, 431, 734
TaiI ACGT 4 cut(s) 516, 603, 912, 920
TaqI TCGA 2 cut(s) 143, 510
TasI AATT 2 cut(s) 451, 940
TatI WGTACW 1 cut(s) 849
TauI GCSGC 3 cut(s) 62, 354, 608
TfiI GAWTC 1 cut(s) 222
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 854
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 2 cut(s) 178, 335
XapI RAATTY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 841
ZraI GACGTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.