Rmu_sc0004888.1_g000055

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004888.1
OG0023108
Physical Location & Seq
Forward (+)
280226 .. 282112
1887 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ctgaaagggactcccaggaagagcttcaggtggctcaaggagacctgtgatagagtggtctatggccggctttggcatagtatgtggagtgcgcatgctatgaagaacatgaagccgacaatcgcttggctgacggtaggatcgcatacctcacaacacatcacccacaacgacgccgttagtcacctcaattcctcgtctccagtatccctgtggaggaagaagagggttgctagctacaaggtgtacactgtggaggggaagctgaaagggactcacaggaagatcttcaggtggctcaaggagacttgtggtctatggccgcttgcattgggtgagttttttggggtacagcagctgactgcattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

10.42

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 73 - 104 1.4e-15 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023108)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004888.1_g000051 Rmu_sc0004888.1_g000055
rosa_rugosa Rorug02G0205500
rosa_samantha Rh2DG269200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 2 cut(s) 64, 320
AcuI CTGAAG 2 cut(s) 10, 274
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 2 cut(s) 248, 351
AfiI CCNNNNNNNGG 1 cut(s) 216
AhdI GACNNNNNGTC 1 cut(s) 312
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 4 cut(s) 24, 237, 265, 358
AluI AGCT 4 cut(s) 24, 237, 265, 358
Alw26I GTCTC 3 cut(s) 35, 204, 299
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 2 cut(s) 64, 320
ApeKI GCWGC 1 cut(s) 355
Asp700I GAANNNNTTC 2 cut(s) 23, 287
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 154, 176, 347
AsuNHI GCTAGC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 16
BciVI GTATCC 1 cut(s) 217
BcoDI GTCTC 3 cut(s) 35, 204, 299
BfaI CTAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 217
BglII AGATCT 1 cut(s) 285
BisI GCNGC 2 cut(s) 323, 356
BlsI GCNGC 2 cut(s) 324, 357
Bme1390I CCNGG 1 cut(s) 16
BmeRI GACNNNNNGTC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 16
BmtI GCTAGC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 20, 284
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 2 cut(s) 66, 322
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 2 cut(s) 22, 286
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 3 cut(s) 35, 204, 299
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 2 cut(s) 22, 286
BsnI GGCC 2 cut(s) 66, 322
Bso31I GGTCTC 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 2 cut(s) 140, 285
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 66, 322
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 66
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 140, 285
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 136, 253
Bst6I CTCTTC 2 cut(s) 14, 218
BstACI GRCGYC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 68, 96, 235, 327
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 143, 288
BstMAI GTCTC 3 cut(s) 35, 204, 299
BstMBI GATC 2 cut(s) 140, 285
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 66, 322
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 4 cut(s) 68, 96, 235, 327
CaiI CAGNNNCTG 1 cut(s) 358
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 66
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 247, 350
CviAII CATG 2 cut(s) 95, 109
CviQI GTAC 2 cut(s) 247, 350
DpnI GATC 2 cut(s) 142, 287
DpnII GATC 2 cut(s) 140, 285
DriI GACNNNNNGTC 1 cut(s) 312
EaeI YGGCCR 2 cut(s) 64, 320
Eam1104I CTCTTC 2 cut(s) 14, 218
Eam1105I GACNNNNNGTC 1 cut(s) 312
EarI CTCTTC 2 cut(s) 14, 218
Eco31I GGTCTC 1 cut(s) 35
Eco57I CTGAAG 2 cut(s) 10, 274
EcoRII CCWGG 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 2 cut(s) 98, 112
FaiI YATR 8 cut(s) 63, 78, 83, 96, 101, 110, 147, 319
FaqI GGGAC 2 cut(s) 22, 286
FatI CATG 2 cut(s) 94, 108
Fnu4HI GCNGC 2 cut(s) 323, 356
Fsp4HI GCNGC 2 cut(s) 323, 356
FspAI RTGCGCAY 1 cut(s) 93
FspBI CTAG 1 cut(s) 234
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 1 cut(s) 93
GluI GCNGC 2 cut(s) 323, 356
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 66, 322
HapII CCGG 1 cut(s) 67
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 98, 112
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 2 cut(s) 10, 274
HpaII CCGG 1 cut(s) 67
HphI GGTGA 3 cut(s) 154, 176, 347
Hpy166II GTNNAC 2 cut(s) 247, 249
Hpy8I GTNNAC 2 cut(s) 247, 249
Hpy99I CGWCG 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 136, 253
HpyCH4V TGCA 2 cut(s) 329, 365
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 98, 112
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
Kzo9I GATC 2 cut(s) 140, 285
LguI GCTCTTC 1 cut(s) 14
LpnPI CCDG 8 cut(s) 13, 28, 58, 80, 216, 224, 265, 277
Lsp1109I GCAGC 1 cut(s) 367
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 142, 287
MboI GATC 2 cut(s) 140, 285
MboII GAAGA 6 cut(s) 31, 115, 232, 235, 280, 295
MflI RGATCY 1 cut(s) 285
MluCI AATT 1 cut(s) 190
MlyI GAGTC 2 cut(s) 4, 268
MnlI CCTC 6 cut(s) 160, 197, 205, 210, 219, 250
MroNI GCCGGC 1 cut(s) 66
MroXI GAANNNNTTC 2 cut(s) 23, 287
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
NaeI GCCGGC 1 cut(s) 68
NdeII GATC 2 cut(s) 140, 285
NgoMIV GCCGGC 1 cut(s) 66
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 98, 112
NmuCI GTSAC 1 cut(s) 182
NsbI TGCGCA 1 cut(s) 93
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 68
PdmI GAANNNNTTC 2 cut(s) 23, 287
PkrI GCNGC 2 cut(s) 324, 357
PleI GAGTC 2 cut(s) 4, 268
PpsI GAGTC 2 cut(s) 4, 268
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 2 cut(s) 248, 351
RsaNI GTAC 2 cut(s) 247, 350
SapI GCTCTTC 1 cut(s) 14
SatI GCNGC 2 cut(s) 323, 356
Sau3AI GATC 2 cut(s) 140, 285
SchI GAGTC 2 cut(s) 4, 268
ScrFI CCNGG 1 cut(s) 16
SmlI CTYRAG 2 cut(s) 35, 299
SmoI CTYRAG 2 cut(s) 35, 299
SphI GCATGC 1 cut(s) 98
Sse9I AATT 1 cut(s) 190
SsiI CCGC 1 cut(s) 323
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 136, 253
TasI AATT 1 cut(s) 190
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 325
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 116, 125
TspRI CASTG 1 cut(s) 256
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmnI GAANNNNTTC 2 cut(s) 23, 287
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.