Rmu_sc0004889.1_g000016

beta-1,3-galactosyltransferase 20

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004889.1
Physical Location & Seq
Forward (+)
61197 .. 67116
5920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004889.1_g000016.1.cds

Sequence Viewer

Length: 2379 bp
atgaagaggccgaaaagtgagcctccggttactaggaggttcaaattgcagcatttgttgcttggtatagcagcattgtacttgcttttcatatcctttaagtttccccagtttcttgatatagcaaaggcgttcagtggcgatgatggttatgacctggccattggagactcagatttgagtaaaccgttgtttaattccgtttataaggatacatatcaccggaaattggaagataaccaagatcaggatgcgcccgtgaggcctagtaaggagcctatggaagagaagagaaatggctctaagactataaagccacttcagcatcgatatggccggataactggtgagatcatgaggcggaggaatagaacaaatgaactttcggtgtttgagaggatggcagatgaggcttggacattagggttaaatgcttgggaagaagtggataaacttgatgtcaaggagacaggagatagttctatatttgagggaaaaccagagtcatgcccttcatggttatcaatgagtggggaagaattcgcaatgggagataggttgatgttccttccttgtgggcttgctgctggttcttctattactctggtgggaacatcccataatgctcataaggaatatgtgcctcagcttgtaaagctgagaaggggtaatggaatggttatggtctcgcagttcatggttgagttgcaaggcttaaagtcagtggatggggaggacccgccaaagatcctgcacttaaatccacgattacgaggagattggagtcagcggccagtcatcgagcacaacacctgttataggatgcagtggggatcagctcaaaggtgtgacggttcagcatccaagaacagtgaagaaatgctagttgatggatatgcgaggtgtgaaaagtggatgcgaaatgatatggtagcagcacaggaatccaagacgaagactacctcatggtttaagcgttttatagggcgtgagcagaagccagaagttacttggcccttcccctttgtggagggtagactatttatcctgacaatacgagctggtgtagatggattccatattagtgttggcggcaggcatgtgacttcatttccatatcggacgggatttacacttgaagatgcaactggattagcaataaaaggagacgtggatgttcattctgtttatgttacgtcacttcccagttctcatcgaagtttctcacctcaaagggtactggagttgtcaaagaagtggaaagctcatcctttacctaggactcctattcgactatttattggggttctttctgctacaaatcattttgcagagcgcatggcagtgagaaaaacttggatgcaatcatcagcaatcaagtcctcggaagtagtcgtccgtttctttgttgcattgaatgctaggaaggaagtaaatgcagtactgaagaaagaggctgcttactttggcgatattgtgatcttgccctttatggatcgttacgagcttgtcgttctcaagaccatttctatttgtgagtttggggttcagaatgtgacggcggcatacatcatgaaatgtgatgatgacacatttgttagagtggatactgttttaaaggaaattgagggcatctcttctaaaaagtctctttatatgggcaatcttaacctcttgcatcgtcctctcagaagcggaaaatgggctgtaacctatgaggttcagaatgtgacggcggcatacatcatgaaatgtgatgatgacacatttgttagagtggatactgttttaaaggaaattgagggcatctcttctaaaaagtctctttatatgggcaatcttaacctcttgcatcgtcctctcagaagcggaaaatgggctgtaacctatgaggagtggccagaagaagtttatcccccatatgctaatggccctggatacataatttccattgatattgctaaattcattgcctctcagcatgggaatcaaagcctaaggcttttcaagatggaagatgtgagcatgggaatgtgggttgagcaatttaacagttccagggcggctgtccagtactcccataactggaagttctttgtttcaatatatgcagagctactttcaagatcaaactggtctcatcaaacagatatgtgtacttggttgcagcttttcaagatggaagatgtgagcatgggaatgtgggttgagcaatttaacagttccagggcggctgtccagtactcccataactggaagttttgtcagtatgggtgtatggagaactattacacagcacattaccaatctccgagacaaatggtctgtctttgggacaagttggctagaggtagagctcaatgctgcaacttcagatga

Protein Analysis

792

Amino Acids

90.83

Weight (kDa)

8.9

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011074)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AccI GTMKAC 1 cut(s) 1036
AclWI GGATC 3 cut(s) 742, 841, 1503
AcoI YGGCCR 4 cut(s) 159, 334, 791, 1898
AcsI RAATTY 2 cut(s) 539, 1964
AcuI CTGAAG 3 cut(s) 305, 1466, 2356
AfaI GTAC 6 cut(s) 80, 1239, 1443, 2075, 2158, 2243
AfiI CCNNNNNNNGG 6 cut(s) 229, 247, 819, 1027, 2085, 2253
AgsI TTSAA 7 cut(s) 43, 1139, 1417, 2008, 2103, 2124, 2176
AhdI GACNNNNNGTC 1 cut(s) 2321
AjiI CACGTC 1 cut(s) 1171
AjnI CCWGG 4 cut(s) 156, 1933, 2057, 2225
AluBI AGCT 9 cut(s) 649, 658, 839, 1061, 1265, 1507, 2116, 2170, 2357
AluI AGCT 9 cut(s) 649, 658, 839, 1061, 1265, 1507, 2116, 2170, 2357
Alw21I GWGCWC 2 cut(s) 807, 2359
Alw26I GTCTC 8 cut(s) 162, 461, 691, 1161, 1653, 1827, 2142, 2308
AlwI GGATC 3 cut(s) 742, 841, 1503
AoxI GGCC 8 cut(s) 8, 159, 263, 334, 791, 1013, 1898, 1930
ApeKI GCWGC 7 cut(s) 49, 71, 584, 935, 1457, 2167, 2364
ApoI RAATTY 2 cut(s) 539, 1964
ArsI GACNNNNNNTTYG 2 cut(s) 2311, 2343
AspA2I CCTAGG 1 cut(s) 1277
AspLEI GCGC 2 cut(s) 256, 1338
AspS9I GGNCC 3 cut(s) 736, 1014, 1931
AsuHPI GGTGA 3 cut(s) 212, 359, 1218
AvaII GGWCC 1 cut(s) 736
AvrII CCTAGG 1 cut(s) 1277
AxyI CCTNAGG 1 cut(s) 1997
BaeI ACNNNNGTAYC 2 cut(s) 1229, 1262
BalI TGGCCA 2 cut(s) 161, 1900
BanII GRGCYC 1 cut(s) 2359
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 2 cut(s) 807, 2359
BbvCI CCTCAGC 1 cut(s) 645
BbvI GCAGC 7 cut(s) 61, 83, 571, 947, 1444, 2179, 2351
BccI CCATC 7 cut(s) 140, 394, 722, 884, 1064, 2005, 2173
BceAI ACGGC 2 cut(s) 1575, 1749
BciT130I CCWGG 4 cut(s) 158, 1935, 2059, 2227
BciVI GTATCC 4 cut(s) 205, 1600, 1774, 1931
BcoDI GTCTC 8 cut(s) 162, 461, 691, 1161, 1653, 1827, 2142, 2308
BfaI CTAG 6 cut(s) 33, 267, 884, 1278, 1422, 2346
BfuI GTATCC 4 cut(s) 205, 1600, 1774, 1931
BglI GCCNNNNNGGC 1 cut(s) 262
BlnI CCTAGG 1 cut(s) 1277
BmcAI AGTACT 3 cut(s) 1443, 2075, 2243
Bme1390I CCNGG 4 cut(s) 158, 1935, 2059, 2227
Bme18I GGWCC 1 cut(s) 736
BmeRI GACNNNNNGTC 1 cut(s) 2321
BmgBI CACGTC 1 cut(s) 1171
BmgT120I GGNCC 3 cut(s) 736, 1014, 1931
BmiI GGNNCC 2 cut(s) 276, 738
BmrFI CCNGG 4 cut(s) 158, 1935, 2059, 2227
BmrI ACTGGG 2 cut(s) 103, 1200
BmuI ACTGGG 2 cut(s) 103, 1200
BpiI GAAGAC 1 cut(s) 962
BplI GAGNNNNNCTC 4 cut(s) 1619, 1651, 1793, 1825
BpmI CTGGAG 1 cut(s) 1262
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 1502
Bsa29I ATCGAT 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 216
BsaI GGTCTC 2 cut(s) 691, 2142
BsaJI CCNNGG 5 cut(s) 1277, 1383, 1933, 2058, 2226
BsaWI WCCGGW 2 cut(s) 25, 222
Bsc4I CCNNNNNNNGG 6 cut(s) 229, 247, 819, 1027, 2085, 2253
Bse21I CCTNAGG 1 cut(s) 1997
Bse3DI GCAATG 2 cut(s) 552, 1968
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 4 cut(s) 158, 1935, 2059, 2227
BseCI ATCGAT 1 cut(s) 328
BseDI CCNNGG 5 cut(s) 1277, 1383, 1933, 2058, 2226
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 6 cut(s) 229, 247, 819, 1027, 2085, 2253
BseMI GCAATG 2 cut(s) 552, 1968
BseMII CTCAG 6 cut(s) 186, 650, 659, 1702, 1876, 1991
BseRI GAGGAG 2 cut(s) 789, 1907
BseXI GCAGC 7 cut(s) 61, 83, 571, 947, 1444, 2179, 2351
BsgI GTGCAG 1 cut(s) 737
BshFI GGCC 8 cut(s) 10, 161, 265, 336, 793, 1015, 1900, 1932
BshVI ATCGAT 1 cut(s) 328
BsiHKAI GWGCWC 2 cut(s) 807, 2359
BsiSI CCGG 3 cut(s) 26, 223, 337
BslFI GGGAC 1 cut(s) 2348
BslI CCNNNNNNNGG 6 cut(s) 229, 247, 819, 1027, 2085, 2253
BsmAI GTCTC 8 cut(s) 162, 461, 691, 1161, 1653, 1827, 2142, 2308
BsmBI CGTCTC 1 cut(s) 1161
BsmFI GGGAC 1 cut(s) 2348
BsmI GAATGC 1 cut(s) 1423
BsnI GGCC 8 cut(s) 10, 161, 265, 336, 793, 1015, 1900, 1932
Bso31I GGTCTC 2 cut(s) 691, 2142
Bsp1286I GDGCHC 2 cut(s) 807, 2359
Bsp143I GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
BspANI GGCC 8 cut(s) 10, 161, 265, 336, 793, 1015, 1900, 1932
BspCNI CTCAG 6 cut(s) 185, 651, 658, 1701, 1875, 1990
BspDI ATCGAT 1 cut(s) 328
BspHI TCATGA 3 cut(s) 354, 1572, 1746
BspLI GGNNCC 2 cut(s) 276, 738
BspPI GGATC 3 cut(s) 742, 841, 1503
BspTNI GGTCTC 2 cut(s) 691, 2142
BsrDI GCAATG 2 cut(s) 552, 1968
BssECI CCNNGG 5 cut(s) 1277, 1383, 1933, 2058, 2226
BssMI GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
BssT1I CCWWGG 1 cut(s) 1277
Bst2UI CCWGG 4 cut(s) 158, 1935, 2059, 2227
Bst4CI ACNGT 7 cut(s) 189, 854, 872, 1612, 1786, 2054, 2222
Bst6I CTCTTC 4 cut(s) 279, 284, 1642, 1816
BstAPI GCANNNNNTGC 2 cut(s) 58, 1418
BstC8I GCNNGC 2 cut(s) 582, 1097
BstDEI CTNAG 8 cut(s) 172, 303, 645, 659, 1688, 1862, 1977, 1997
BstENI CCTNNNNNAGG 1 cut(s) 817
BstHHI GCGC 2 cut(s) 256, 1338
BstKTI GATC 7 cut(s) 247, 354, 750, 836, 1482, 1498, 2129
BstMAI GTCTC 8 cut(s) 162, 461, 691, 1161, 1653, 1827, 2142, 2308
BstMBI GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
BstMWI GCNNNNNNNGC 6 cut(s) 58, 262, 322, 410, 655, 1418
BstNI CCWGG 4 cut(s) 158, 1935, 2059, 2227
BstNSI RCATGY 1 cut(s) 1103
BstSCI CCNGG 4 cut(s) 156, 1933, 2057, 2225
BstV1I GCAGC 7 cut(s) 61, 83, 571, 947, 1444, 2179, 2351
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
Bsu15I ATCGAT 1 cut(s) 328
Bsu36I CCTNAGG 1 cut(s) 1997
BsuI GTATCC 4 cut(s) 205, 1600, 1774, 1931
BsuRI GGCC 8 cut(s) 10, 161, 265, 336, 793, 1015, 1900, 1932
BsuTUI ATCGAT 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 1171
BtsI GCAGTG 2 cut(s) 833, 1350
BtsIMutI CAGTG 5 cut(s) 142, 729, 833, 877, 1350
Cac8I GCNNGC 2 cut(s) 582, 1097
CciI TCATGA 3 cut(s) 354, 1572, 1746
CfoI GCGC 2 cut(s) 256, 1338
Cfr13I GGNCC 3 cut(s) 736, 1014, 1931
ClaI ATCGAT 1 cut(s) 328
Csp6I GTAC 6 cut(s) 79, 1238, 1442, 2074, 2157, 2242
CviQI GTAC 6 cut(s) 79, 1238, 1442, 2074, 2157, 2242
DdeI CTNAG 8 cut(s) 172, 303, 645, 659, 1688, 1862, 1977, 1997
DpnI GATC 7 cut(s) 246, 353, 749, 835, 1481, 1497, 2128
DpnII GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
DraI TTTAAA 2 cut(s) 1617, 1791
DriI GACNNNNNGTC 1 cut(s) 2321
EaeI YGGCCR 4 cut(s) 159, 334, 791, 1898
Eam1104I CTCTTC 4 cut(s) 279, 284, 1642, 1816
Eam1105I GACNNNNNGTC 1 cut(s) 2321
EarI CTCTTC 4 cut(s) 279, 284, 1642, 1816
EciI GGCGGA 1 cut(s) 376
Ecl136II GAGCTC 1 cut(s) 2357
Eco130I CCWWGG 1 cut(s) 1277
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 2359
Eco31I GGTCTC 2 cut(s) 691, 2142
Eco47I GGWCC 1 cut(s) 736
Eco53kI GAGCTC 1 cut(s) 2357
Eco57I CTGAAG 3 cut(s) 305, 1466, 2356
Eco81I CCTNAGG 1 cut(s) 1997
EcoICRI GAGCTC 1 cut(s) 2357
EcoNI CCTNNNNNAGG 1 cut(s) 817
EcoO109I RGGNCCY 1 cut(s) 736
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 4 cut(s) 156, 1933, 2057, 2225
EcoT14I CCWWGG 1 cut(s) 1277
EcoT38I GRGCYC 1 cut(s) 2359
ErhI CCWWGG 1 cut(s) 1277
Esp3I CGTCTC 1 cut(s) 1161
FaqI GGGAC 1 cut(s) 2348
FauI CCCGC 1 cut(s) 747
FauNDI CATATG 1 cut(s) 1921
FblI GTMKAC 1 cut(s) 1036
FriOI GRGCYC 1 cut(s) 2359
FspBI CTAG 6 cut(s) 33, 267, 884, 1278, 1422, 2346
GlaI GCGC 2 cut(s) 255, 1337
GsuI CTGGAG 1 cut(s) 1262
HaeIII GGCC 8 cut(s) 10, 161, 265, 336, 793, 1015, 1900, 1932
HapII CCGG 3 cut(s) 26, 223, 337
HhaI GCGC 2 cut(s) 256, 1338
Hin6I GCGC 2 cut(s) 254, 1336
HinP1I GCGC 2 cut(s) 254, 1336
HinfI GANTC 7 cut(s) 170, 503, 784, 944, 1074, 1282, 1987
HpaII CCGG 3 cut(s) 26, 223, 337
HphI GGTGA 3 cut(s) 212, 359, 1218
Hpy166II GTNNAC 3 cut(s) 185, 1037, 2157
Hpy188I TCNGA 9 cut(s) 175, 1122, 1387, 1551, 1691, 1725, 1865, 2313, 2375
Hpy8I GTNNAC 3 cut(s) 185, 1037, 2157
HpyAV CCTTC 5 cut(s) 522, 578, 657, 1027, 1420
HpyCH4III ACNGT 7 cut(s) 189, 854, 872, 1612, 1786, 2054, 2222
HpyCH4IV ACGT 2 cut(s) 1170, 1196
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 262, 322, 410, 655, 1418
HpyF3I CTNAG 8 cut(s) 172, 303, 645, 659, 1688, 1862, 1977, 1997
HpySE526I ACGT 2 cut(s) 1170, 1196
HspAI GCGC 2 cut(s) 254, 1336
Kzo9I GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 7 cut(s) 61, 83, 571, 947, 1444, 2179, 2351
MaeI CTAG 6 cut(s) 33, 267, 884, 1278, 1422, 2346
MaeII ACGT 2 cut(s) 1170, 1196
MalI GATC 7 cut(s) 246, 353, 749, 835, 1481, 1497, 2128
MboI GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 2 cut(s) 807, 2359
MlsI TGGCCA 2 cut(s) 161, 1900
MluNI TGGCCA 2 cut(s) 161, 1900
MlyI GAGTC 4 cut(s) 164, 512, 793, 1276
Mox20I TGGCCA 2 cut(s) 161, 1900
MscI TGGCCA 2 cut(s) 161, 1900
MslI CAYNNNNRTG 5 cut(s) 330, 1083, 1343, 2030, 2198
Msp20I TGGCCA 2 cut(s) 161, 1900
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 3 cut(s) 26, 223, 337
MspR9I CCNGG 4 cut(s) 158, 1935, 2059, 2227
Mva1269I GAATGC 1 cut(s) 1423
MvaI CCWGG 4 cut(s) 158, 1935, 2059, 2227
MwoI GCNNNNNNNGC 6 cut(s) 58, 262, 322, 410, 655, 1418
NdeI CATATG 1 cut(s) 1921
NdeII GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
NlaIV GGNNCC 2 cut(s) 276, 738
NmuCI GTSAC 5 cut(s) 848, 1102, 1197, 1555, 1729
NspI RCATGY 1 cut(s) 1103
PagI TCATGA 3 cut(s) 354, 1572, 1746
PceI AGGCCT 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 1509
PctI GAATGC 1 cut(s) 1423
PfeI GAWTC 3 cut(s) 944, 1074, 1987
PleI GAGTC 4 cut(s) 164, 511, 792, 1276
PpsI GAGTC 4 cut(s) 164, 511, 792, 1276
PpuMI RGGWCCY 1 cut(s) 736
PsiI TTATAA 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 2359
Psp5II RGGWCCY 1 cut(s) 736
Psp6I CCWGG 4 cut(s) 156, 1933, 2057, 2225
PspGI CCWGG 4 cut(s) 156, 1933, 2057, 2225
PspN4I GGNNCC 2 cut(s) 276, 738
PspPI GGNCC 3 cut(s) 736, 1014, 1931
PspPPI RGGWCCY 1 cut(s) 736
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 6 cut(s) 80, 1239, 1443, 2075, 2158, 2243
RsaNI GTAC 6 cut(s) 79, 1238, 1442, 2074, 2157, 2242
RseI CAYNNNNRTG 5 cut(s) 330, 1083, 1343, 2030, 2198
SacI GAGCTC 1 cut(s) 2359
Sau3AI GATC 7 cut(s) 244, 351, 747, 833, 1479, 1495, 2126
Sau96I GGNCC 3 cut(s) 736, 1014, 1931
ScaI AGTACT 3 cut(s) 1443, 2075, 2243
SchI GAGTC 4 cut(s) 164, 512, 793, 1276
ScrFI CCNGG 4 cut(s) 158, 1935, 2059, 2227
SduI GDGCHC 2 cut(s) 807, 2359
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 5 cut(s) 330, 1083, 1343, 2030, 2198
SmlI CTYRAG 1 cut(s) 1517
SmoI CTYRAG 1 cut(s) 1517
SseBI AGGCCT 1 cut(s) 265
SspMI CTAG 6 cut(s) 33, 267, 884, 1278, 1422, 2346
SstI GAGCTC 1 cut(s) 2359
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 4 cut(s) 156, 1933, 2057, 2225
StyI CCWWGG 1 cut(s) 1277
TaaI ACNGT 7 cut(s) 189, 854, 872, 1612, 1786, 2054, 2222
TaiI ACGT 2 cut(s) 1173, 1199
TaqI TCGA 4 cut(s) 328, 801, 1216, 1291
TatI WGTACW 5 cut(s) 78, 1441, 2073, 2156, 2241
TauI GCSGC 6 cut(s) 793, 1095, 1565, 1739, 2066, 2234
TfiI GAWTC 3 cut(s) 944, 1074, 1987
TscAI CASTG 5 cut(s) 142, 729, 833, 877, 1350
TseFI GTSAC 5 cut(s) 848, 1102, 1197, 1555, 1729
TseI GCWGC 7 cut(s) 49, 71, 584, 935, 1457, 2167, 2364
Tsp45I GTSAC 5 cut(s) 848, 1102, 1197, 1555, 1729
TspGWI ACGGA 2 cut(s) 190, 1388
TspRI CASTG 5 cut(s) 142, 729, 833, 877, 1350
VpaK11BI GGWCC 1 cut(s) 736
XagI CCTNNNNNAGG 1 cut(s) 817
XapI RAATTY 2 cut(s) 539, 1964
XceI RCATGY 1 cut(s) 1103
XcmI CCANNNNNNNNNTGG 2 cut(s) 1008, 1085
XmaJI CCTAGG 1 cut(s) 1277
XmiI GTMKAC 1 cut(s) 1036
XspI CTAG 6 cut(s) 33, 267, 884, 1278, 1422, 2346
ZrmI AGTACT 3 cut(s) 1443, 2075, 2243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.