Rmu_sc0004918.1_g000010

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004918.1
OG0021360
Physical Location & Seq
Forward (+)
22989 .. 23453
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004918.1_g000010.1.cds

Sequence Viewer

Length: 465 bp
atgacagagattccagagacctatgggtacagaaaggccttcaggactgtgtttaggacgctccagagcctcgaaaactataagggtgtgacatttttgaggactttctctccggcacactttgaaaatggggcttggaacgctggagggagttgtgggaggacgaagccttttagcaaagaggaaatgaagttagaaggatttattttggacatgtatatgactcaagtagaagagctcaaagcagcacaaaaccaagctaagcagaaaggtctggattttagattgatggaaacaactgaagcaatgctgctgagacctgatggacacccaaatttctatggagcctcaccgcataggaatacgacttatgccgactgtgttcactggtgcttgcctggccctattgatacatggaatgagattttgctgcatatgttgaagacagggcagagatcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

154

Amino Acids

17.69

Weight (kDa)

7.75

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021360)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163731
rosa_multiflora Rmu_sc0004918.1_g000010 Rmu_sc0006596.1_g000001 Rmu_sc0026453.1_g000002
rosa_samantha Rh2BG582900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 2 cut(s) 25, 321
AfaI GTAC 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 2 cut(s) 125, 442
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 2 cut(s) 238, 260
AluI AGCT 2 cut(s) 238, 260
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 11, 310
AoxI GGCC 2 cut(s) 36, 400
ApeKI GCWGC 3 cut(s) 245, 310, 430
ApoI RAATTY 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 342
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 257, 297, 417
BccI CCATC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 11, 310
BisI GCNGC 3 cut(s) 246, 311, 431
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 3 cut(s) 247, 312, 432
Bme1390I CCNGG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 2 cut(s) 47, 165
Bpu1102I GCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 210
BsaI GGTCTC 2 cut(s) 11, 310
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 257, 297, 417
BshFI GGCC 2 cut(s) 38, 402
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 11, 310
BsnI GGCC 2 cut(s) 38, 402
Bso31I GGTCTC 2 cut(s) 11, 310
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 455
Bsp1720I GCTNAGC 1 cut(s) 261
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 38, 402
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 228
BspTNI GGTCTC 2 cut(s) 11, 310
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 392
BssMI GATC 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 49, 380
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 261, 314
BstKTI GATC 1 cut(s) 458
BstMAI GTCTC 2 cut(s) 11, 310
BstMBI GATC 1 cut(s) 455
BstMWI GCNNNNNNNGC 2 cut(s) 140, 399
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 257, 297, 417
BstV2I GAAGAC 1 cut(s) 449
BsuRI GGCC 2 cut(s) 38, 402
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 214, 414
CviJI RGCY 8 cut(s) 38, 69, 134, 169, 238, 260, 347, 402
CviKI_1 RGCY 8 cut(s) 38, 69, 134, 169, 238, 260, 347, 402
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 261, 314
DpnI GATC 1 cut(s) 457
DpnII GATC 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 2 cut(s) 11, 310
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 25, 321
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 2 cut(s) 217, 417
FatI CATG 2 cut(s) 213, 413
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 246, 311, 431
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 246, 311, 431
GluI GCNGC 3 cut(s) 246, 311, 431
GsuI CTGGAG 2 cut(s) 47, 165
HaeIII GGCC 2 cut(s) 38, 402
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 217, 417
HinfI GANTC 2 cut(s) 10, 223
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 385
Hpy188III TCNNGA 4 cut(s) 14, 43, 64, 275
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 49, 191
HpyCH4III ACNGT 2 cut(s) 49, 380
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 399
HpyF3I CTNAG 2 cut(s) 261, 314
Hsp92II CATG 2 cut(s) 217, 417
Kzo9I GATC 1 cut(s) 455
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 66, 344
Lsp1109I GCAGC 3 cut(s) 257, 297, 417
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 457
MboI GATC 1 cut(s) 455
MboII GAAGA 2 cut(s) 245, 454
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 6 cut(s) 80, 93, 140, 153, 175, 358
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 140, 399
NdeI CATATG 1 cut(s) 435
NdeII GATC 1 cut(s) 455
NlaIII CATG 2 cut(s) 217, 417
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 217
PceI AGGCCT 1 cut(s) 38
PciI ACATGT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 3 cut(s) 247, 312, 432
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PscI ACATGT 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 401
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 228
SatI GCNGC 3 cut(s) 246, 311, 431
Sau3AI GATC 1 cut(s) 455
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 240
SetI ASST 5 cut(s) 23, 240, 262, 274, 322
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 1 cut(s) 334
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 1 cut(s) 353
SstI GAGCTC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 49, 380
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 334
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 245, 310, 430
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 392
XapI RAATTY 1 cut(s) 334
XceI RCATGY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.