Rmu_sc0026453.1_g000002

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026453.1
OG0021360
Physical Location & Seq
Reverse (-)
3392 .. 3856
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026453.1_g000002.1.cds

Sequence Viewer

Length: 465 bp
atgacagagattccagagacctatgggtacagaaaggccttcaggactgtgtttaggacgctccagagcctcgaaaactataagggtgtgacatttttgaggactttctctccggcacactttgaaaatggggcttggaacgctggagggagttgtgggaggacgaagccttttagcaaagaggaaatgaagttagaaggatttattttggacatgtatatgactcaagtagaagagctcaaagcagcacaaaaccaagctaagcagaaaggtctggattttagattgatggaaacaactgaagcaatgctgctgagacctgatggacacccaaatttctatggagcctcaccgcataggaatacgacttatgccgactgtgttcactggtgcttgcctggccctattgatacatggaatgagattttgctgcatatgttgaagacagggcagagatcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

154

Amino Acids

17.69

Weight (kDa)

7.75

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021360)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163731
rosa_multiflora Rmu_sc0004918.1_g000010 Rmu_sc0006596.1_g000001 Rmu_sc0026453.1_g000002
rosa_samantha Rh2BG582900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 2 cut(s) 25, 321
AfaI GTAC 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 2 cut(s) 125, 442
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 2 cut(s) 238, 260
AluI AGCT 2 cut(s) 238, 260
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 11, 310
AoxI GGCC 2 cut(s) 36, 400
ApeKI GCWGC 3 cut(s) 245, 310, 430
ApoI RAATTY 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 342
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 257, 297, 417
BccI CCATC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 11, 310
BisI GCNGC 3 cut(s) 246, 311, 431
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 3 cut(s) 247, 312, 432
Bme1390I CCNGG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 2 cut(s) 47, 165
Bpu1102I GCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 210
BsaI GGTCTC 2 cut(s) 11, 310
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 257, 297, 417
BshFI GGCC 2 cut(s) 38, 402
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 11, 310
BsnI GGCC 2 cut(s) 38, 402
Bso31I GGTCTC 2 cut(s) 11, 310
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 455
Bsp1720I GCTNAGC 1 cut(s) 261
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 38, 402
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 228
BspTNI GGTCTC 2 cut(s) 11, 310
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 392
BssMI GATC 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 49, 380
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 261, 314
BstKTI GATC 1 cut(s) 458
BstMAI GTCTC 2 cut(s) 11, 310
BstMBI GATC 1 cut(s) 455
BstMWI GCNNNNNNNGC 2 cut(s) 140, 399
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 257, 297, 417
BstV2I GAAGAC 1 cut(s) 449
BsuRI GGCC 2 cut(s) 38, 402
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 214, 414
CviJI RGCY 8 cut(s) 38, 69, 134, 169, 238, 260, 347, 402
CviKI_1 RGCY 8 cut(s) 38, 69, 134, 169, 238, 260, 347, 402
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 261, 314
DpnI GATC 1 cut(s) 457
DpnII GATC 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 2 cut(s) 11, 310
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 25, 321
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 2 cut(s) 217, 417
FatI CATG 2 cut(s) 213, 413
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 246, 311, 431
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 246, 311, 431
GluI GCNGC 3 cut(s) 246, 311, 431
GsuI CTGGAG 2 cut(s) 47, 165
HaeIII GGCC 2 cut(s) 38, 402
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 217, 417
HinfI GANTC 2 cut(s) 10, 223
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 385
Hpy188III TCNNGA 4 cut(s) 14, 43, 64, 275
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 49, 191
HpyCH4III ACNGT 2 cut(s) 49, 380
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 399
HpyF3I CTNAG 2 cut(s) 261, 314
Hsp92II CATG 2 cut(s) 217, 417
Kzo9I GATC 1 cut(s) 455
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 66, 344
Lsp1109I GCAGC 3 cut(s) 257, 297, 417
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 457
MboI GATC 1 cut(s) 455
MboII GAAGA 2 cut(s) 245, 454
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 6 cut(s) 80, 93, 140, 153, 175, 358
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 140, 399
NdeI CATATG 1 cut(s) 435
NdeII GATC 1 cut(s) 455
NlaIII CATG 2 cut(s) 217, 417
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 217
PceI AGGCCT 1 cut(s) 38
PciI ACATGT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 3 cut(s) 247, 312, 432
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PscI ACATGT 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 401
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 228
SatI GCNGC 3 cut(s) 246, 311, 431
Sau3AI GATC 1 cut(s) 455
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 240
SetI ASST 5 cut(s) 23, 240, 262, 274, 322
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 1 cut(s) 334
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 1 cut(s) 353
SstI GAGCTC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 49, 380
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 334
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 245, 310, 430
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 392
XapI RAATTY 1 cut(s) 334
XceI RCATGY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.