Rh2BG582900

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0021360
Physical Location & Seq
Reverse (-)
79941675 .. 79946075
4401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG582900.1

Sequence Viewer

Length: 774 bp
ATGGCAGCAATTTCGGTGAACCTAGCTCTCATCTCCTCCTTCCTCGCCTGCGCCGTCGCTCAGCTCCTCAAGCTCTGCACGTCCTGGTACAAAGATAGGAGATGGGATTCGAAACGACTACTGAATTCTGGAGGAATGTCATCGTCGCATTGGGCGACTGTGACGGCGCTGATGGTGGCCGTTGGGCTAGACCAGGAGCTTGTTGCAATCGACTATGTGATCGTCTCAGCAGGGCAATGGTTCTTCCGGCCGCTAGTGTATTATGAAAATGGTGGAAGTATTGGGTGTCACTGGTGCAACCTGGACAACATGACAGAGATTCCAGAGACCTATGGGTACAGAAAGGCCTTCAGGACTGTGTTTAGGACGCTCCAGAGCCTCGAAAACTATAAGGGTGTGACATTTTTGAGGACTTTCTCTCCGGCACACTTTGAAAATGGGGCTTGGAACGCTGGAGGGAGTTGTGGGAGGACGAAGCCTTTTAGCAAAGAGGAAATGAAGTTAGAAGGATTTATTTTGGACATGTATATGACTCAAGTAGAAGAGCTCAAAGCAGCACAAAGCCAAGCTAAGCAGAAAGGTCTGGACTTTAGATTGATGGAAACAACTGAAGCAATGCTGCTGAGACCTGATGGACACCCAAATTTCTATGGAGCCTCACCGCATAGGAATACGACTTATGCCGACTGTGTTCACTGGTGCTTGCCTGGCCCTATTGATACATGGAATGAGATTTTGCTGCATATGTTGAAGACAGGGCAGAGATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

257

Amino Acids

29.03

Weight (kDa)

7.61

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 7 - 72 1.1e-15 Divergent PAP2 family
PC-Esterase PF13839 65 - 249 2.5e-55 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021360)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163731
rosa_multiflora Rmu_sc0004918.1_g000010 Rmu_sc0006596.1_g000001 Rmu_sc0026453.1_g000002
rosa_samantha Rh2BG582900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 251, 662
AcoI YGGCCR 2 cut(s) 177, 248
AcsI RAATTY 2 cut(s) 124, 643
AcuI CTGAAG 2 cut(s) 334, 630
AfaI GTAC 2 cut(s) 89, 338
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 2 cut(s) 434, 751
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 4 cut(s) 83, 192, 300, 706
AluBI AGCT 6 cut(s) 26, 64, 73, 199, 547, 569
AluI AGCT 6 cut(s) 26, 64, 73, 199, 547, 569
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 3 cut(s) 229, 320, 619
AoxI GGCC 4 cut(s) 177, 248, 345, 709
ApeKI GCWGC 4 cut(s) 5, 554, 619, 739
ApoI RAATTY 2 cut(s) 124, 643
AspLEI GCGC 2 cut(s) 53, 169
AspS9I GGNCC 1 cut(s) 710
AsuHPI GGTGA 2 cut(s) 28, 651
AsuII TTCGAA 1 cut(s) 110
BanII GRGCYC 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 4 cut(s) 17, 566, 606, 726
BccI CCATC 4 cut(s) 96, 166, 592, 626
BceAI ACGGC 3 cut(s) 38, 164, 180
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 4 cut(s) 85, 194, 302, 708
BcoDI GTCTC 3 cut(s) 229, 320, 619
BfaI CTAG 3 cut(s) 23, 188, 254
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 5 cut(s) 6, 251, 555, 620, 740
BlpI GCTNAGC 2 cut(s) 60, 570
BlsI GCNGC 5 cut(s) 7, 252, 556, 621, 741
Bme1390I CCNGG 4 cut(s) 85, 194, 302, 708
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 1 cut(s) 655
BmrFI CCNGG 4 cut(s) 85, 194, 302, 708
BpiI GAAGAC 1 cut(s) 758
BpmI CTGGAG 3 cut(s) 150, 356, 474
Bpu1102I GCTNAGC 2 cut(s) 60, 570
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 2 cut(s) 53, 519
BsaI GGTCTC 2 cut(s) 320, 619
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bse1I ACTGG 2 cut(s) 296, 701
Bse3DI GCAATG 2 cut(s) 242, 621
BseBI CCWGG 4 cut(s) 85, 194, 302, 708
BseMI GCAATG 2 cut(s) 242, 621
BseMII CTCAG 3 cut(s) 74, 240, 614
BseNI ACTGG 2 cut(s) 296, 701
BseRI GAGGAG 2 cut(s) 25, 56
BseX3I CGGCCG 1 cut(s) 248
BseXI GCAGC 4 cut(s) 17, 566, 606, 726
BsgI GTGCAG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 4 cut(s) 179, 250, 347, 711
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 247, 422
BsmAI GTCTC 3 cut(s) 229, 320, 619
BsmBI CGTCTC 1 cut(s) 229
BsnI GGCC 4 cut(s) 179, 250, 347, 711
Bso31I GGTCTC 2 cut(s) 320, 619
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 2 cut(s) 219, 764
Bsp1720I GCTNAGC 2 cut(s) 60, 570
BspACI CCGC 2 cut(s) 251, 662
BspANI GGCC 4 cut(s) 179, 250, 347, 711
BspCNI CTCAG 3 cut(s) 73, 239, 615
BspLI GGNNCC 1 cut(s) 655
BspQI GCTCTTC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 110
BspTNI GGTCTC 2 cut(s) 320, 619
BsrDI GCAATG 2 cut(s) 242, 621
BsrI ACTGG 2 cut(s) 296, 701
BssMI GATC 2 cut(s) 219, 764
Bst2UI CCWGG 4 cut(s) 85, 194, 302, 708
Bst4CI ACNGT 3 cut(s) 160, 358, 689
Bst6I CTCTTC 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 49, 704
BstDEI CTNAG 4 cut(s) 60, 226, 570, 623
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 2 cut(s) 53, 169
BstKTI GATC 2 cut(s) 222, 767
BstMAI GTCTC 3 cut(s) 229, 320, 619
BstMBI GATC 2 cut(s) 219, 764
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 3 cut(s) 70, 449, 708
BstNI CCWGG 4 cut(s) 85, 194, 302, 708
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 4 cut(s) 83, 192, 300, 706
BstV1I GCAGC 4 cut(s) 17, 566, 606, 726
BstV2I GAAGAC 1 cut(s) 758
BstZI CGGCCG 1 cut(s) 248
BsuRI GGCC 4 cut(s) 179, 250, 347, 711
BtrI CACGTC 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 289, 694
Cac8I GCNNGC 2 cut(s) 49, 704
CfoI GCGC 2 cut(s) 53, 169
Cfr13I GGNCC 1 cut(s) 710
CseI GACGC 1 cut(s) 376
Csp6I GTAC 2 cut(s) 88, 337
CviAII CATG 3 cut(s) 310, 523, 723
CviQI GTAC 2 cut(s) 88, 337
DdeI CTNAG 4 cut(s) 60, 226, 570, 623
DpnI GATC 2 cut(s) 221, 766
DpnII GATC 2 cut(s) 219, 764
EaeI YGGCCR 2 cut(s) 177, 248
EagI CGGCCG 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 547
EclXI CGGCCG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 549
Eco31I GGTCTC 2 cut(s) 320, 619
Eco52I CGGCCG 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 334, 630
EcoICRI GAGCTC 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 4 cut(s) 83, 192, 300, 706
EcoT38I GRGCYC 1 cut(s) 549
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 3 cut(s) 313, 526, 726
FatI CATG 3 cut(s) 309, 522, 722
FauNDI CATATG 1 cut(s) 744
Fnu4HI GCNGC 5 cut(s) 6, 251, 555, 620, 740
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 5 cut(s) 6, 251, 555, 620, 740
FspBI CTAG 3 cut(s) 23, 188, 254
GlaI GCGC 2 cut(s) 52, 168
GluI GCNGC 5 cut(s) 6, 251, 555, 620, 740
GsuI CTGGAG 3 cut(s) 150, 356, 474
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 4 cut(s) 179, 250, 347, 711
HapII CCGG 2 cut(s) 247, 422
HgaI GACGC 1 cut(s) 376
HhaI GCGC 2 cut(s) 53, 169
Hin1II CATG 3 cut(s) 313, 526, 726
Hin6I GCGC 2 cut(s) 51, 167
HinP1I GCGC 2 cut(s) 51, 167
HinfI GANTC 3 cut(s) 107, 319, 532
HpaII CCGG 2 cut(s) 247, 422
HphI GGTGA 2 cut(s) 28, 651
Hpy166II GTNNAC 2 cut(s) 19, 694
Hpy188III TCNNGA 5 cut(s) 129, 323, 352, 373, 584
Hpy8I GTNNAC 2 cut(s) 19, 694
Hpy99I CGWCG 2 cut(s) 59, 148
HpyAV CCTTC 3 cut(s) 49, 358, 500
HpyCH4III ACNGT 3 cut(s) 160, 358, 689
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 78, 206, 297, 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 449, 708
HpyF3I CTNAG 4 cut(s) 60, 226, 570, 623
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 3 cut(s) 313, 526, 726
HspAI GCGC 2 cut(s) 51, 167
Kzo9I GATC 2 cut(s) 219, 764
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 4 cut(s) 69, 196, 375, 653
Lsp1109I GCAGC 4 cut(s) 17, 566, 606, 726
MaeI CTAG 3 cut(s) 23, 188, 254
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 160, 287, 397
MalI GATC 2 cut(s) 221, 766
MboI GATC 2 cut(s) 219, 764
MboII GAAGA 3 cut(s) 235, 554, 763
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 3 cut(s) 9, 124, 643
MlyI GAGTC 1 cut(s) 526
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 2 cut(s) 247, 422
MspR9I CCNGG 4 cut(s) 85, 194, 302, 708
MvaI CCWGG 4 cut(s) 85, 194, 302, 708
MwoI GCNNNNNNNGC 3 cut(s) 70, 449, 708
NdeI CATATG 1 cut(s) 744
NdeII GATC 2 cut(s) 219, 764
NlaIII CATG 3 cut(s) 313, 526, 726
NlaIV GGNNCC 1 cut(s) 655
NmuCI GTSAC 3 cut(s) 160, 287, 397
NspI RCATGY 1 cut(s) 526
NspV TTCGAA 1 cut(s) 110
PceI AGGCCT 1 cut(s) 347
PciI ACATGT 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 152
PfeI GAWTC 2 cut(s) 107, 319
PkrI GCNGC 5 cut(s) 7, 252, 556, 621, 741
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PscI ACATGT 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 549
Psp6I CCWGG 4 cut(s) 83, 192, 300, 706
PspGI CCWGG 4 cut(s) 83, 192, 300, 706
PspN4I GGNNCC 1 cut(s) 655
PspPI GGNCC 1 cut(s) 710
RsaI GTAC 2 cut(s) 89, 338
RsaNI GTAC 2 cut(s) 88, 337
RseI CAYNNNNRTG 1 cut(s) 527
SacI GAGCTC 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 537
SatI GCNGC 5 cut(s) 6, 251, 555, 620, 740
Sau3AI GATC 2 cut(s) 219, 764
Sau96I GGNCC 1 cut(s) 710
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 4 cut(s) 85, 194, 302, 708
SduI GDGCHC 1 cut(s) 549
SfuI TTCGAA 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 2 cut(s) 68, 534
SmoI CTYRAG 2 cut(s) 68, 534
Sse9I AATT 3 cut(s) 9, 124, 643
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 2 cut(s) 251, 662
SspMI CTAG 3 cut(s) 23, 188, 254
SstI GAGCTC 1 cut(s) 549
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 4 cut(s) 83, 192, 300, 706
TaaI ACNGT 3 cut(s) 160, 358, 689
TaiI ACGT 1 cut(s) 83
TaqI TCGA 3 cut(s) 110, 210, 381
TasI AATT 3 cut(s) 9, 124, 643
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 2 cut(s) 107, 319
TscAI CASTG 2 cut(s) 296, 701
TseFI GTSAC 3 cut(s) 160, 287, 397
TseI GCWGC 4 cut(s) 5, 554, 619, 739
Tsp45I GTSAC 3 cut(s) 160, 287, 397
TspDTI ATGAA 2 cut(s) 279, 512
TspRI CASTG 2 cut(s) 296, 701
XapI RAATTY 2 cut(s) 124, 643
XceI RCATGY 1 cut(s) 526
XspI CTAG 3 cut(s) 23, 188, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.