Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005065.1

Orthogroup ID

OG0017998

Physical Location & Seq

Genomic Coordinates Reverse (-)

66796 .. 67680

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggctaatcaccagaaactgaaggtgacaccagagttctcgaaacatatagagttattcctctccgacatggacgacagcctgaaactgcaattatgctccttcgtccttgaaaacctggaagaattccgccgtggccgcgccaccaaaacatattcttattgccctatccccgcctccattgaggaacggcgtgtcgttgggggtcaacttcagttctccgaagacggtcaagaggtcgactgcactaaaacgcaggggcgcaaaatcatccccaatgtcgacaaggttagggtcgatgacatgaagagtagttctgtgcctgctaatgatagtgatgttggtcacgtattttacgagcgtcatccgtgtatagttgtgaatgttgaagaggaacttgattcggtgacgaagctctttctgtgtaagctgaagatggagctgaagcttccgatgcttgcacttgtggacagcagtccagatggggttaagattatttcgaccgtgtctcaatgctatgggtgcattgtcgattggcttgggatattaccaagcgaattggataagggtatgtttgtcatagccaacgaccctatgatcagaatccccatgactgacagtgatttgaagacattggaagatctgatggagaatgacgactttgtgaaggagaagatgaggaatccaaaatgtttggaggaaccgactctgatggagaatgatgatttgattgagaaggtgaagaatctggagctgagtaatctgatggggaatgacttttcgaaggagaataggaagaatccaacatggtttgacgagctgactctgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

277

Amino Acids

31.65

Weight (kDa)

4.81

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	118 - 228	1e-11	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017998)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06051 FvH4_4g12771
rosa_laevigata	RLG00000003317 RLG00000003318
rosa_multiflora	Rmu_sc0003652.1_g000002 Rmu_sc0005065.1_g000016
rosa_roxburghii	Rroxscaffold_3G00251590
rosa_samantha	Rh7AG228500 Rh7BG224900 Rh7CG243100 Rh7CG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	240, 282
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	130, 139, 174
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	4 cut(s)	41, 197, 452, 464
AgsI	TTSAA	3 cut(s)	113, 389, 628
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	415, 430, 442, 448, 754, 820
AluI	AGCT	6 cut(s)	415, 430, 442, 448, 754, 820
Alw26I	GTCTC	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	143, 264
AsuHPI	GGTGA	3 cut(s)	37, 418, 751
AsuII	TTCGAA	1 cut(s)	782
BbsI	GAAGAC	2 cut(s)	231, 635
BccI	CCATC	5 cut(s)	430, 476, 640, 706, 760
BceAI	ACGGC	2 cut(s)	117, 206
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	702
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	444
BoxI	GACNNNNGTC	1 cut(s)	474
BpiI	GAAGAC	2 cut(s)	231, 635
BpmI	CTGGAG	1 cut(s)	770
Bpu14I	TTCGAA	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	270, 364
BseJI	GATNNNNATC	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	746
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	782
Bsp143I	GATC	2 cut(s)	597, 640
BspACI	CCGC	3 cut(s)	130, 139, 174
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	747
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	702
BspT104I	TTCGAA	1 cut(s)	782
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	597, 640
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	230, 505, 620
Bst6I	CTCTTC	2 cut(s)	302, 384
BstBAI	YACGTR	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	782
BstC8I	GCNNGC	2 cut(s)	324, 459
BstDEI	CTNAG	1 cut(s)	755
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	270, 364
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	143, 264
BstKTI	GATC	2 cut(s)	600, 643
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	2 cut(s)	597, 640
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 454, 522
BstNI	CCWGG	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	2 cut(s)	231, 635
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	270, 364
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	2 cut(s)	324, 459
CaiI	CAGNNNCTG	1 cut(s)	19
CfoI	GCGC	2 cut(s)	143, 264
CseI	GACGC	1 cut(s)	350
CviAII	CATG	4 cut(s)	70, 304, 610, 807
DdeI	CTNAG	1 cut(s)	755
DpnI	GATC	2 cut(s)	599, 642
DpnII	GATC	2 cut(s)	597, 640
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	302, 384
EarI	CTCTTC	2 cut(s)	302, 384
EciI	GGCGGA	1 cut(s)	119
Eco57I	CTGAAG	4 cut(s)	41, 197, 452, 464
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	73, 307, 613, 810
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	4 cut(s)	69, 303, 609, 806
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	597
FblI	GTMKAC	2 cut(s)	240, 282
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	2 cut(s)	257, 351
Fsp4HI	GCNGC	1 cut(s)	139
GlaI	GCGC	2 cut(s)	142, 263
GluI	GCNGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	770
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	143, 264
Hin1II	CATG	4 cut(s)	73, 307, 613, 810
Hin6I	GCGC	2 cut(s)	141, 262
HinP1I	GCGC	2 cut(s)	141, 262
HincII	GTYRAC	3 cut(s)	209, 241, 283
HindII	GTYRAC	3 cut(s)	209, 241, 283
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	7 cut(s)	401, 603, 682, 706, 745, 799, 823
HphI	GGTGA	3 cut(s)	37, 418, 751
Hpy166II	GTNNAC	4 cut(s)	209, 241, 283, 469
Hpy188I	TCNGA	8 cut(s)	67, 223, 453, 602, 645, 711, 765, 828
Hpy188III	TCNNGA	4 cut(s)	40, 233, 479, 749
Hpy8I	GTNNAC	4 cut(s)	209, 241, 283, 469
HpyAV	CCTTC	5 cut(s)	16, 112, 661, 730, 778
HpyCH4III	ACNGT	3 cut(s)	230, 505, 620
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	91, 246, 461, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 454, 522
HpyF3I	CTNAG	1 cut(s)	755
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	4 cut(s)	73, 307, 613, 810
HspAI	GCGC	2 cut(s)	141, 262
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	597, 640
LmnI	GCTCC	3 cut(s)	104, 439, 751
LpnPI	CCDG	9 cut(s)	26, 45, 95, 104, 131, 242, 336, 492, 734
LweI	GCATC	1 cut(s)	444
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	3 cut(s)	25, 344, 406
MalI	GATC	2 cut(s)	599, 642
MboI	GATC	2 cut(s)	597, 640
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	3 cut(s)	92, 125, 557
MlyI	GAGTC	2 cut(s)	700, 817
MmeI	TCCRAC	2 cut(s)	90, 827
MnlI	CCTC	7 cut(s)	71, 178, 187, 229, 385, 672, 691
MseI	TTAA	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	138, 454, 522
NdeII	GATC	2 cut(s)	597, 640
NlaIII	CATG	4 cut(s)	73, 307, 613, 810
NlaIV	GGNNCC	1 cut(s)	702
NmuCI	GTSAC	3 cut(s)	25, 344, 406
NspV	TTCGAA	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	5 cut(s)	401, 603, 682, 745, 799
PflFI	GACNNNGTC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	2 cut(s)	700, 817
PpsI	GAGTC	2 cut(s)	700, 817
Ppu21I	YACGTR	1 cut(s)	349
PshAI	GACNNNNGTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	702
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	640
PsyI	GACNNNGTC	1 cut(s)	505
SalI	GTCGAC	2 cut(s)	239, 281
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	2 cut(s)	597, 640
SchI	GAGTC	2 cut(s)	700, 817
ScrFI	CCNGG	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	782
Sse9I	AATT	3 cut(s)	92, 125, 557
SsiI	CCGC	3 cut(s)	130, 139, 174
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	230, 505, 620
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	7 cut(s)	41, 240, 282, 297, 500, 531, 782
TasI	AATT	3 cut(s)	92, 125, 557
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	5 cut(s)	401, 603, 682, 745, 799
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	3 cut(s)	25, 344, 406
Tsp45I	GTSAC	3 cut(s)	25, 344, 406
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	625
Tth111I	GACNNNGTC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	240, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.