Rmu_sc0005268.1_g000006

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005268.1
OG0022976
Physical Location & Seq
Forward (+)
18762 .. 19959
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atggaaacacaaacacttcccaaggccgagccggaacgcgactatgctccggtgaagagcttcggggagggcctgtcggttggttggaaggagacggtgaagctatggaaagttgcagctccggtggcttgtacgactctttttcagtacctgattcattccatcaccaccatcttcatcggccatctcggagatcttcagctctctgctatttcccccgctcataatgttatcaacaccatcgccttggcttcctgtccaccaacatttggagtcccagcatccctaaagaccaagaagaagcttgtttgtcattttgaagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

108

Amino Acids

11.78

Weight (kDa)

7.75

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022976)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026476
rosa_multiflora Rmu_sc0005268.1_g000006
rosa_samantha Rh1BG384400
rosa_wichuraiana Rw0G004100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 221
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 2 cut(s) 133, 149
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 5 cut(s) 60, 103, 119, 202, 304
AluI AGCT 5 cut(s) 60, 103, 119, 202, 304
Alw26I GTCTC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 3 cut(s) 24, 70, 181
ApeKI GCWGC 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 64, 109, 157
BbvI GCAGC 1 cut(s) 128
BccI CCATC 4 cut(s) 170, 179, 192, 248
BcoDI GTCTC 1 cut(s) 86
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 21, 246
BsaWI WCCGGW 2 cut(s) 49, 121
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 21, 246
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 26, 72, 183
BsiSI CCGG 3 cut(s) 32, 50, 122
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 3 cut(s) 26, 72, 183
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 219
BspANI GGCC 3 cut(s) 26, 72, 183
BspFNI CGCG 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 21, 246
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 2 cut(s) 21, 246
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 50
BstF5I GGATG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 3 cut(s) 26, 72, 183
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 132, 148
CviQI GTAC 2 cut(s) 132, 148
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 21, 246
Eco57I CTGAAG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 21, 246
ErhI CCWWGG 2 cut(s) 21, 246
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 3 cut(s) 45, 106, 225
FaqI GGGAC 1 cut(s) 260
FauI CCCGC 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 3 cut(s) 26, 72, 183
HapII CCGG 3 cut(s) 32, 50, 122
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 3 cut(s) 136, 154, 273
HpaII CCGG 3 cut(s) 32, 50, 122
HphI GGTGA 3 cut(s) 64, 109, 157
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 193
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 52, 124
LpnPI CCDG 7 cut(s) 45, 63, 86, 135, 164, 268, 291
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 290
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 221
MboI GATC 1 cut(s) 193
MboII GAAGA 4 cut(s) 67, 166, 188, 310
MflI RGATCY 1 cut(s) 193
MlyI GAGTC 2 cut(s) 130, 282
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 59
MspI CCGG 3 cut(s) 32, 50, 122
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 130, 281
PpsI GAGTC 2 cut(s) 130, 281
PspFI CCCAGC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 133, 149
RsaNI GTAC 2 cut(s) 132, 148
SapI GCTCTTC 1 cut(s) 50
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 2 cut(s) 130, 282
SetI ASST 6 cut(s) 62, 105, 121, 153, 204, 306
SfaNI GCATC 1 cut(s) 290
SsiI CCGC 1 cut(s) 219
StyI CCWWGG 2 cut(s) 21, 246
TaaI ACNGT 1 cut(s) 97
TfiI GAWTC 1 cut(s) 154
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 146, 166
Van91I CCANNNNNTGG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.