Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005431.1

Orthogroup ID

OG0023112

Physical Location & Seq

Genomic Coordinates Forward (+)

111383 .. 111850

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgcaccttactcttttacctcttcgcccttctcgtcttcctcaccctcgcctcctcctccacctccctcacctacgccacactctccctaccctcttcttcctcctccccaccttcgtcccccaacccccatatcctacccgaccagtttctctcccgacccaacagagccactgcgtcgtctaccacgataacaactcctccgatccgacccctccttccttggcccacctcctctccgggtctaaaggcgacttgggtcagatcctacgcctcctcgatggcacctaccgccccagaaaccaatacctcctccacctcgatctctttgcttcccagacagaccgtgaccaactggccctcaaggtccaatccgtccccatcttcagagccgcccataatgtccatctcatcgataaagctgacgctgtgcaccgaagagggtcgtcttctatctcgttcacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

155

Amino Acids

17.5

Weight (kDa)

10.11

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	75 - 152	1.5e-06	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0023112)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005431.1_g000024 Rmu_sc0015062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348080 Rroxscaffold_5G00360300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	292, 393
AclWI	GGATC	2 cut(s)	200, 259
AcuI	CTGAAG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	435
Alw44I	GTGCAC	1 cut(s)	431
AlwI	GGATC	2 cut(s)	200, 259
AoxI	GGCC	2 cut(s)	225, 357
ApaLI	GTGCAC	1 cut(s)	431
AspS9I	GGNCC	3 cut(s)	226, 358, 367
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	35, 62
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	29, 441
Bbv12I	GWGCWC	1 cut(s)	435
BccI	CCATC	3 cut(s)	275, 389, 414
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcnI	CCSGG	1 cut(s)	241
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	226, 358, 367
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	258
BpiI	GAAGAC	2 cut(s)	29, 441
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 221, 251
Bse1I	ACTGG	2 cut(s)	146, 360
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	146, 360
BseRI	GAGGAG	7 cut(s)	44, 47, 95, 190, 224, 266, 302
BseSI	GKGCMC	1 cut(s)	435
BshFI	GGCC	2 cut(s)	227, 359
BshNI	GGYRCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	104, 362
BsmFI	GGGAC	2 cut(s)	104, 362
BsnI	GGCC	2 cut(s)	227, 359
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	205, 264, 322
BspACI	CCGC	2 cut(s)	292, 393
BspANI	GGCC	2 cut(s)	227, 359
BspDI	ATCGAT	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	200, 259
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	146, 360
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	205, 264, 322
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	3 cut(s)	27, 101, 433
BstKTI	GATC	3 cut(s)	208, 267, 325
BstMBI	GATC	3 cut(s)	205, 264, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	435
BstV2I	GAAGAC	2 cut(s)	29, 441
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	227, 359
BsuTUI	ATCGAT	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	226, 358, 367
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	2 cut(s)	166, 434
CviJI	RGCY	5 cut(s)	171, 227, 359, 392, 422
CviKI_1	RGCY	5 cut(s)	171, 227, 359, 392, 422
DpnI	GATC	3 cut(s)	207, 266, 324
DpnII	GATC	3 cut(s)	205, 264, 322
Eam1104I	CTCTTC	3 cut(s)	27, 101, 433
EarI	CTCTTC	3 cut(s)	27, 101, 433
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	2 cut(s)	133, 399
FaqI	GGGAC	2 cut(s)	104, 362
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	227, 359
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	2 cut(s)	166, 434
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	35, 62
Hpy166II	GTNNAC	3 cut(s)	184, 433, 462
Hpy188I	TCNGA	4 cut(s)	205, 210, 264, 389
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	184, 433, 462
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	39, 124, 228
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	4, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	205, 264, 322
LpnPI	CCDG	5 cut(s)	159, 253, 310, 341, 350
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	3 cut(s)	207, 266, 324
MboI	GATC	3 cut(s)	205, 264, 322
MboII	GAAGA	7 cut(s)	14, 29, 88, 91, 376, 441, 450
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	233
MseI	TTAA	1 cut(s)	466
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	205, 264, 322
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 186
PkrI	GCNGC	1 cut(s)	394
PshAI	GACNNNNGTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	3 cut(s)	226, 358, 367
PsuI	RGATCY	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	466
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	205, 264, 322
Sau96I	GGNCC	3 cut(s)	226, 358, 367
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	435
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SsiI	CCGC	2 cut(s)	292, 393
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	3 cut(s)	279, 321, 414
TauI	GCSGC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	466
Tru9I	TTAA	1 cut(s)	466
TscAI	CASTG	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.