Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0023112

Physical Location & Seq

Genomic Coordinates Forward (+)

40706251 .. 40709623

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAATCAATCTCCTGTGCTTGCGTTAACTCGAAGAAGAAAGCAAGTTCTCCTCTCCAAAAGGGAGTAGCATTTCAAACAAACTCTAATGTAAATCTAAGAGTGAAAAAGAAGAACACCCTTAGAGTCACAAAAGCCAGCCTCATTGACCAGTTCGCATTACAATTAATGTACTTCAATTACATTGCTCATGTCCCTGGAAAAGTGTTGTCATCAACGGTGAGACCGACGAACCGGTCCCAATTGGTTGACAAGCTGGAGCATAATCGACGCGCGTGGAGCACGGCCACCACCACCTCCCTCTCCTCCGCTCTCTCTCCCGCTCTCTTTGCCTTTTACCTCTTCGCCCTTTCTCGTCTTCCTCACCCTCGCCTCCTCCTCCGCCTCCCTCACATACGCCACACTCTCCCCACCCTCTTCTTCCTCCTCCCCACCTTCGTCCCCCAACCCCCGTATCCCACCCGACCGTTTCTCTCCCGACCCAACGAGTCACCGCATTGTCTACCACGACAACAACTCCTCCGATCCGACCCCTCCTTCCTTTGGCCCACCTCCTCTCCGGGTCTAAAGGCGACTTGGGTCGATCCTACGCCTCCTCGATGCCACCTACCACCACGAAACCAATACCTCCTCCACCTCGATCTTTTTGCTTCCCGGACGGACCGTGACCAACCGGCCCTCAAGGTCCAATCCGTCCCCATCTTCAAAGCAGCCCGAATGTCCATCTCATCGATAAAGGCGACGTTGTGTACCGAAAAGGGTCGTCTTCTATCTCATTCACTTAAAAGAGAGCGGGAGAGGAAGGAGGAAAGGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

272

Amino Acids

30.89

Weight (kDa)

10.89

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023112)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005431.1_g000024 Rmu_sc0015062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348080 Rroxscaffold_5G00360300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AccBSI	CCGCTC	3 cut(s)	311, 323, 793
AccI	GTMKAC	1 cut(s)	502
AccII	CGCG	2 cut(s)	273, 275
AciI	CCGC	5 cut(s)	309, 321, 382, 494, 793
AclWI	GGATC	2 cut(s)	519, 578
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	2 cut(s)	173, 751
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	77, 178, 706
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	519, 578
AoxI	GGCC	3 cut(s)	285, 545, 675
ApeKI	GCWGC	1 cut(s)	710
AseI	ATTAAT	1 cut(s)	167
AsiGI	ACCGGT	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	5 cut(s)	237, 546, 661, 676, 685
AsuC2I	CCSGG	2 cut(s)	561, 655
AsuHPI	GGTGA	3 cut(s)	232, 356, 483
AvaII	GGWCC	3 cut(s)	237, 661, 685
BaeI	ACNNNNGTAYC	2 cut(s)	437, 470
BbsI	GAAGAC	2 cut(s)	350, 758
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	2 cut(s)	707, 731
BceAI	ACGGC	1 cut(s)	300
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	465
BcnI	CCSGG	2 cut(s)	561, 655
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	817
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	1 cut(s)	711
BlsI	GCNGC	1 cut(s)	712
Bme1390I	CCNGG	3 cut(s)	198, 561, 655
Bme18I	GGWCC	3 cut(s)	237, 661, 685
BmgT120I	GGNCC	5 cut(s)	237, 546, 661, 676, 685
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	3 cut(s)	198, 561, 655
BmsI	GCATC	1 cut(s)	590
BoxI	GACNNNNGTC	1 cut(s)	578
BpiI	GAAGAC	2 cut(s)	350, 758
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	561, 655
Bsa29I	ATCGAT	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	234
BsaXI	ACNNNNNCTCC	6 cut(s)	501, 504, 531, 534, 541, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse118I	RCCGGY	2 cut(s)	234, 673
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	731
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	9 cut(s)	42, 295, 365, 368, 416, 509, 544, 585, 620
BseXI	GCAGC	1 cut(s)	722
Bsh1236I	CGCG	2 cut(s)	273, 275
Bsh1285I	CGRYCG	1 cut(s)	467
BshFI	GGCC	3 cut(s)	287, 547, 677
BshTI	ACCGGT	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	731
BsiEI	CGRYCG	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	235, 560, 655, 674
BslFI	GGGAC	4 cut(s)	179, 223, 425, 680
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	4 cut(s)	179, 223, 425, 680
BsnI	GGCC	3 cut(s)	287, 547, 677
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	524, 583, 640
BspACI	CCGC	5 cut(s)	309, 321, 382, 494, 793
BspANI	GGCC	3 cut(s)	287, 547, 677
BspDI	ATCGAT	1 cut(s)	731
BspFNI	CGCG	2 cut(s)	273, 275
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	519, 578
BspTNI	GGTCTC	1 cut(s)	217
BsrBI	CCGCTC	3 cut(s)	311, 323, 793
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	234, 673
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	2 cut(s)	234, 673
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	524, 583, 640
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	220, 468, 665
Bst6I	CTCTTC	2 cut(s)	347, 422
BstC8I	GCNNGC	2 cut(s)	22, 139
BstDEI	CTNAG	2 cut(s)	98, 122
BstFNI	CGCG	2 cut(s)	273, 275
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	527, 586, 643
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	524, 583, 640
BstMCI	CGRYCG	1 cut(s)	467
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 329
BstNI	CCWGG	1 cut(s)	198
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSCI	CCNGG	3 cut(s)	196, 559, 653
BstUI	CGCG	2 cut(s)	273, 275
BstV1I	GCAGC	1 cut(s)	722
BstV2I	GAAGAC	2 cut(s)	350, 758
Bsu15I	ATCGAT	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	287, 547, 677
BsuTUI	ATCGAT	1 cut(s)	731
Cac8I	GCNNGC	2 cut(s)	22, 139
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	2 cut(s)	234, 673
Cfr13I	GGNCC	5 cut(s)	237, 546, 661, 676, 685
ClaI	ATCGAT	1 cut(s)	731
CpoI	CGGWCCG	1 cut(s)	661
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	172, 750
CspAI	ACCGGT	1 cut(s)	234
CspI	CGGWCCG	1 cut(s)	661
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	8 cut(s)	137, 141, 256, 287, 547, 677, 713, 816
CviKI_1	RGCY	8 cut(s)	137, 141, 256, 287, 547, 677, 713, 816
CviQI	GTAC	2 cut(s)	172, 750
DdeI	CTNAG	2 cut(s)	98, 122
DpnI	GATC	3 cut(s)	526, 585, 642
DpnII	GATC	3 cut(s)	524, 583, 640
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	347, 422
EarI	CTCTTC	2 cut(s)	347, 422
EciI	GGCGGA	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	237, 661, 685
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	1 cut(s)	194
FaiI	YATR	3 cut(s)	192, 264, 395
FaqI	GGGAC	4 cut(s)	179, 223, 425, 680
FatI	CATG	1 cut(s)	190
FauI	CCCGC	2 cut(s)	328, 786
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	711
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	1 cut(s)	817
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	1 cut(s)	711
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	287, 547, 677
HapII	CCGG	4 cut(s)	235, 560, 655, 674
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	2 cut(s)	28, 250
HindII	GTYRAC	2 cut(s)	28, 250
HinfI	GANTC	2 cut(s)	126, 488
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	4 cut(s)	235, 560, 655, 674
HphI	GGTGA	3 cut(s)	232, 356, 483
Hpy166II	GTNNAC	4 cut(s)	28, 250, 503, 750
Hpy188I	TCNGA	2 cut(s)	524, 529
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	4 cut(s)	28, 250, 503, 750
Hpy99I	CGWCG	3 cut(s)	232, 273, 745
HpyAV	CCTTC	3 cut(s)	445, 547, 796
HpyCH4III	ACNGT	3 cut(s)	220, 468, 665
HpyCH4IV	ACGT	1 cut(s)	743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 329
HpyF3I	CTNAG	2 cut(s)	98, 122
HpySE526I	ACGT	1 cut(s)	743
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	524, 583, 640
LmnI	GCTCC	2 cut(s)	259, 279
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	1 cut(s)	817
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	3 cut(s)	127, 489, 665
MalI	GATC	3 cut(s)	526, 585, 642
MbiI	CCGCTC	3 cut(s)	311, 323, 793
MboI	GATC	3 cut(s)	524, 583, 640
MboII	GAAGA	9 cut(s)	46, 49, 124, 334, 350, 409, 412, 694, 758
MfeI	CAATTG	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	164, 178, 242
MlyI	GAGTC	2 cut(s)	135, 497
MmeI	TCCRAC	1 cut(s)	552
MseI	TTAA	3 cut(s)	27, 167, 783
MspI	CCGG	4 cut(s)	235, 560, 655, 674
MspR9I	CCNGG	3 cut(s)	198, 561, 655
MunI	CAATTG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	2 cut(s)	273, 275
MwoI	GCNNNNNNNGC	2 cut(s)	279, 329
NciI	CCSGG	2 cut(s)	561, 655
NdeII	GATC	3 cut(s)	524, 583, 640
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	3 cut(s)	127, 489, 665
PcsI	WCGNNNNNNNCGW	2 cut(s)	224, 737
PfoI	TCCNGGA	1 cut(s)	653
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	2 cut(s)	134, 496
PpsI	GAGTC	2 cut(s)	134, 496
PshAI	GACNNNNGTC	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	5 cut(s)	237, 546, 661, 676, 685
RsaI	GTAC	2 cut(s)	173, 751
RsaNI	GTAC	2 cut(s)	172, 750
Rsr2I	CGGWCCG	1 cut(s)	661
RsrII	CGGWCCG	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	27, 167, 783
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	3 cut(s)	524, 583, 640
Sau96I	GGNCC	5 cut(s)	237, 546, 661, 676, 685
SchI	GAGTC	2 cut(s)	135, 497
ScrFI	CCNGG	3 cut(s)	198, 561, 655
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	590
SinI	GGWCC	3 cut(s)	237, 661, 685
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	3 cut(s)	164, 178, 242
SsiI	CCGC	5 cut(s)	309, 321, 382, 494, 793
SspMI	CTAG	1 cut(s)	817
StyD4I	CCNGG	3 cut(s)	196, 559, 653
TaaI	ACNGT	3 cut(s)	220, 468, 665
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	6 cut(s)	32, 268, 582, 598, 639, 731
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	3 cut(s)	164, 178, 242
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	27, 167, 783
Tru9I	TTAA	3 cut(s)	27, 167, 783
TseFI	GTSAC	3 cut(s)	127, 489, 665
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	3 cut(s)	127, 489, 665
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	674, 682
VpaK11BI	GGWCC	3 cut(s)	237, 661, 685
VspI	ATTAAT	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	502
XspI	CTAG	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.