Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0023112

Physical Location & Seq

Genomic Coordinates Forward (+)

19980144 .. 19984074

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAATCAATCTCCTATGCTTGCGTTAACTCGAAGAAGAAAGCAAGTTCTCCTCTCCAAAAGGGAGTAGCATTTGTGTTGCAATGTGCGAACCAAAACAAAATACGAGCTTCTTTTCAAGCACGGCCACCACCGCCTCCCTCTCCTCCGCTCTCCTCCCGCTCTCTTTGCCTTTTACCTCTTCGCCCTTCTCGTCTTCCTCACCCTCGCCTCCTCCTCCGCCTCCCTCACCTACGCCACACTCTCTCCACCTCTTCTTCCTCCTCTCCACCTTCATCGCCCAACCCCCATATCCCACCCGACCGGTTCTCTCCCGACCCAACGAGCCACCGCGTCGTCTACCACGACAACAACTCCTCCGATCCGACCCTCTCGTCCTTGGTCCTCTCCGGTCTAAAGGCGACTTGGGTCGATCCTACGCCTCCTCGATGCCACCTACCACCCCGAAACCAATACCTCCTCCACCTCGATCTCTTTGCTTCCCGGACGGACCGTGACCAATCGGCCCTCAAGGTCCAATCCGTCCCCATCTTCGAGCCGCCCGAATGTCCATCTCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

187

Amino Acids

20.67

Weight (kDa)

10.11

Isoelectric Point (pI)

76.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023112)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005431.1_g000024 Rmu_sc0015062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348080 Rroxscaffold_5G00360300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AccBSI	CCGCTC	2 cut(s)	151, 162
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	333
AciI	CCGC	6 cut(s)	134, 149, 160, 220, 331, 539
AclWI	GGATC	2 cut(s)	356, 407
AcoI	YGGCCR	1 cut(s)	125
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	2 cut(s)	356, 407
AoxI	GGCC	2 cut(s)	125, 504
AsiGI	ACCGGT	1 cut(s)	303
AspS9I	GGNCC	4 cut(s)	382, 490, 505, 514
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	194, 221
AvaII	GGWCC	3 cut(s)	382, 490, 514
BbsI	GAAGAC	1 cut(s)	188
BccI	CCATC	2 cut(s)	536, 559
BceAI	ACGGC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BcnI	CCSGG	1 cut(s)	484
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	3 cut(s)	382, 490, 514
BmgT120I	GGNCC	4 cut(s)	382, 490, 505, 514
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	419
BoxI	GACNNNNGTC	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	2 cut(s)	303, 389
BsaXI	ACNNNNNCTCC	6 cut(s)	230, 260, 338, 341, 368, 371
Bse118I	RCCGGY	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	89
BseRI	GAGGAG	9 cut(s)	42, 135, 145, 203, 206, 253, 346, 414, 449
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	127, 506
BshTI	ACCGGT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	304
BsiSI	CCGG	3 cut(s)	304, 390, 484
BslFI	GGGAC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	127, 506
Bsp143I	GATC	3 cut(s)	361, 412, 469
BspACI	CCGC	6 cut(s)	134, 149, 160, 220, 331, 539
BspANI	GGCC	2 cut(s)	127, 506
BspFNI	CGCG	1 cut(s)	333
BspPI	GGATC	2 cut(s)	356, 407
BsrBI	CCGCTC	2 cut(s)	151, 162
BsrDI	GCAATG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	361, 412, 469
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	2 cut(s)	186, 259
BstC8I	GCNNGC	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	364, 415, 472
BstMBI	GATC	3 cut(s)	361, 412, 469
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 168
BstPAI	GACNNNNGTC	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	482
BstUI	CGCG	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	127, 506
BtgZI	GCGATG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	4 cut(s)	382, 490, 505, 514
CpoI	CGGWCCG	1 cut(s)	490
CseI	GACGC	1 cut(s)	322
CspAI	ACCGGT	1 cut(s)	303
CspI	CGGWCCG	1 cut(s)	490
CviJI	RGCY	5 cut(s)	110, 127, 327, 506, 538
CviKI_1	RGCY	5 cut(s)	110, 127, 327, 506, 538
DpnI	GATC	3 cut(s)	363, 414, 471
DpnII	GATC	3 cut(s)	361, 412, 469
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	186, 259
EarI	CTCTTC	2 cut(s)	186, 259
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	378
Eco47I	GGWCC	3 cut(s)	382, 490, 514
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaiI	YATR	2 cut(s)	18, 291
FaqI	GGGAC	1 cut(s)	509
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	539
GluI	GCNGC	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	127, 506
HapII	CCGG	3 cut(s)	304, 390, 484
HgaI	GACGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	304, 390, 484
HphI	GGTGA	2 cut(s)	194, 221
Hpy166II	GTNNAC	2 cut(s)	28, 340
Hpy188I	TCNGA	2 cut(s)	361, 366
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	2 cut(s)	28, 340
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	198, 282
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 168
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	361, 412, 469
LpnPI	CCDG	3 cut(s)	317, 403, 497
LweI	GCATC	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	3 cut(s)	363, 414, 471
MbiI	CCGCTC	2 cut(s)	151, 162
MboI	GATC	3 cut(s)	361, 412, 469
MboII	GAAGA	7 cut(s)	46, 49, 173, 188, 246, 249, 523
MmeI	TCCRAC	1 cut(s)	389
MseI	TTAA	1 cut(s)	27
MspI	CCGG	3 cut(s)	304, 390, 484
MspR9I	CCNGG	1 cut(s)	484
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	133, 168
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	3 cut(s)	361, 412, 469
NmuCI	GTSAC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	3 cut(s)	190, 342, 540
PfoI	TCCNGGA	1 cut(s)	482
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	540
PshAI	GACNNNNGTC	1 cut(s)	407
PspPI	GGNCC	4 cut(s)	382, 490, 505, 514
Rsr2I	CGGWCCG	1 cut(s)	490
RsrII	CGGWCCG	1 cut(s)	490
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	3 cut(s)	361, 412, 469
Sau96I	GGNCC	4 cut(s)	382, 490, 505, 514
ScrFI	CCNGG	1 cut(s)	484
SetI	ASST	9 cut(s)	112, 181, 234, 254, 274, 438, 459, 468, 516
SfaNI	GCATC	1 cut(s)	419
SinI	GGWCC	3 cut(s)	382, 490, 514
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
SsiI	CCGC	6 cut(s)	134, 149, 160, 220, 331, 539
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	5 cut(s)	32, 411, 427, 468, 534
TauI	GCSGC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	17, 264
TspGWI	ACGGA	2 cut(s)	503, 511
VpaK11BI	GGWCC	3 cut(s)	382, 490, 514
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.