Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015062.1

Orthogroup ID

OG0023112

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 727

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015062.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

cacggccaccaccgcctccctctcctccgctatcctcccgcaatctttgccttttacctcttcgcccttctcgtcgcactcgatgttgacctcttcgagcttgcaggggtacaaggagaagtagccatcggtgaggggagagagagagagagattgattgggcttcgaccagtttctctcccgacccaacagatccaccgcgtcgtctaccacgacaacaactcctccgatccgacccctccttccttggcccacctcctctcctggtctaaaggcgacttgggtcagatcctacgcctcctcgatgccacctaccaccccagaaaccaatacctcctccacctggatctctttgcttcccagacagaccgtgaccaactggccctcaaggtccaatccgtccccatcttcagagccgcccagaatgtccatctcatcgataaagggtcgtcctctatctcgttcacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

6.82

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023112)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005431.1_g000024 Rmu_sc0015062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348080 Rroxscaffold_5G00360300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	201
AciI	CCGC	5 cut(s)	13, 28, 39, 199, 417
AclWI	GGATC	4 cut(s)	187, 224, 283, 354
AcoI	YGGCCR	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	263, 342
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AlwI	GGATC	4 cut(s)	187, 224, 283, 354
AoxI	GGCC	3 cut(s)	4, 249, 381
AspS9I	GGNCC	3 cut(s)	250, 382, 391
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	391
BccI	CCATC	3 cut(s)	134, 413, 438
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	2 cut(s)	265, 344
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	265, 344
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	3 cut(s)	250, 382, 391
BmrFI	CCNGG	2 cut(s)	265, 344
BmsI	GCATC	1 cut(s)	295
BoxI	GACNNNNGTC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 209, 236, 239, 245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	170, 384
BseBI	CCWGG	2 cut(s)	265, 344
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	2 cut(s)	170, 384
BseRI	GAGGAG	5 cut(s)	14, 214, 248, 290, 326
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	6, 251, 383
BshVI	ATCGAT	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	3 cut(s)	6, 251, 383
Bsp143I	GATC	4 cut(s)	192, 229, 288, 346
BspACI	CCGC	5 cut(s)	13, 28, 39, 199, 417
BspANI	GGCC	3 cut(s)	6, 251, 383
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	201
BspPI	GGATC	4 cut(s)	187, 224, 283, 354
BsrI	ACTGG	2 cut(s)	170, 384
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	4 cut(s)	192, 229, 288, 346
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	265, 344
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	2 cut(s)	65, 98
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	468
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	4 cut(s)	195, 232, 291, 349
BstMBI	GATC	4 cut(s)	192, 229, 288, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 47
BstNI	CCWGG	2 cut(s)	265, 344
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	263, 342
BstUI	CGCG	1 cut(s)	201
BstX2I	RGATCY	3 cut(s)	192, 288, 346
BstYI	RGATCY	3 cut(s)	192, 288, 346
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	6, 251, 383
BsuTUI	ATCGAT	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	3 cut(s)	250, 382, 391
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	110
CviJI	RGCY	7 cut(s)	6, 100, 125, 163, 251, 383, 416
CviKI_1	RGCY	7 cut(s)	6, 100, 125, 163, 251, 383, 416
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	4 cut(s)	194, 231, 290, 348
DpnII	GATC	4 cut(s)	192, 229, 288, 346
EaeI	YGGCCR	1 cut(s)	4
Eam1104I	CTCTTC	2 cut(s)	65, 98
EarI	CTCTTC	2 cut(s)	65, 98
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	263, 342
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaqI	GGGAC	1 cut(s)	386
FauI	CCCGC	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	417
Fsp4HI	GCNGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	6, 251, 383
HgaI	GACGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	88, 208, 465
Hpy188I	TCNGA	4 cut(s)	229, 234, 288, 413
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	3 cut(s)	88, 208, 465
Hpy99I	CGWCG	2 cut(s)	77, 206
HpyAV	CCTTC	2 cut(s)	77, 252
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 47
HpyF3I	CTNAG	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	192, 229, 288, 346
LweI	GCATC	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	194, 231, 290, 348
MboI	GATC	4 cut(s)	192, 229, 288, 346
MboII	GAAGA	3 cut(s)	52, 85, 400
MflI	RGATCY	3 cut(s)	192, 288, 346
MmeI	TCCRAC	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	265, 344
MvaI	CCWGG	2 cut(s)	265, 344
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	12, 47
NdeII	GATC	4 cut(s)	192, 229, 288, 346
NmuCI	GTSAC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 78, 210
PkrI	GCNGC	1 cut(s)	418
PshAI	GACNNNNGTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	263, 342
PspGI	CCWGG	2 cut(s)	263, 342
PspPI	GGNCC	3 cut(s)	250, 382, 391
PsuI	RGATCY	3 cut(s)	192, 288, 346
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	192, 229, 288, 346
Sau96I	GGNCC	3 cut(s)	250, 382, 391
ScrFI	CCNGG	2 cut(s)	265, 344
SetI	ASST	8 cut(s)	60, 93, 102, 258, 314, 336, 345, 393
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	5 cut(s)	13, 28, 39, 199, 417
StyD4I	CCNGG	2 cut(s)	263, 342
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	5 cut(s)	81, 96, 166, 303, 438
TauI	GCSGC	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.