Rmu_sc0005786.1_g000001

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005786.1
OG0023115
Physical Location & Seq
Reverse (-)
2 .. 592
591 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 395 bp
atggagaaatcggggtcgcgcgagctacgatgcgtagggaaattagaaatcgaaaggccaaagcccgtcggcttcctctgcggctcaatccctgttcccaccgacaaacccttccactcttttcactccgctctcattccctccccccaaacagtcagtgctcctcgttatcggatgcttcccactgagactgacctcaacagccctccgctcctctccagttttcccgataagattcttcccgtccattccggagataaagcctgggacggcggtgctgtcacatcaaatcttgctaggaaatgtgaggccctggctgtttctggtttagttgagtatggagatgagattgatgtaattgctcccgctgacattctcaagcagatattcaaaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.2

Weight (kDa)

6.28

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023115)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005786.1_g000001 Rmu_sc0014039.1_g000008
rosa_samantha Rh5DG472500
rosa_wichuraiana Rw0G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 131, 211
AccII CGCG 2 cut(s) 19, 21
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 5 cut(s) 81, 129, 209, 273, 366
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 2 cut(s) 263, 312
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 2 cut(s) 56, 309
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 2 cut(s) 265, 314
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 265, 314
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 265, 314
BmsI GCATC 2 cut(s) 20, 165
BpmI CTGGAG 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 264, 312
BsaWI WCCGGW 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 219
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 2 cut(s) 265, 314
BseDI CCNNGG 2 cut(s) 264, 312
BseGI GGATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 153, 203
Bsh1236I CGCG 2 cut(s) 19, 21
BshFI GGCC 2 cut(s) 58, 311
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 58, 311
Bsp1286I GDGCHC 1 cut(s) 163
Bsp13I TCCGGA 1 cut(s) 251
BspACI CCGC 5 cut(s) 81, 129, 209, 273, 366
BspANI GGCC 2 cut(s) 58, 311
BspCNI CTCAG 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 2 cut(s) 19, 21
BsrBI CCGCTC 2 cut(s) 131, 211
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 264, 312
Bst2UI CCWGG 2 cut(s) 265, 314
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 19, 21
BstHHI GCGC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 2 cut(s) 265, 314
BstSCI CCNGG 2 cut(s) 263, 312
BstUI CGCG 2 cut(s) 19, 21
BsuRI GGCC 2 cut(s) 58, 311
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 163, 183
Cac8I GCNNGC 1 cut(s) 23
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 310
CviJI RGCY 9 cut(s) 25, 58, 64, 72, 84, 204, 263, 311, 317
CviKI_1 RGCY 9 cut(s) 25, 58, 64, 72, 84, 204, 263, 311, 317
DdeI CTNAG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 263, 312
FaiI YATR 1 cut(s) 339
FaqI GGGAC 1 cut(s) 281
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 2 cut(s) 58, 311
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 2 cut(s) 227, 252
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 186
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 251
LmnI GCTCC 3 cut(s) 166, 216, 367
LpnPI CCDG 8 cut(s) 105, 232, 250, 265, 277, 299, 309, 326
LweI GCATC 2 cut(s) 20, 165
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 280
MbiI CCGCTC 2 cut(s) 131, 211
MboII GAAGA 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 41, 357
MnlI CCTC 7 cut(s) 86, 151, 174, 206, 216, 224, 301
MroI TCCGGA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 265, 314
MvaI CCWGG 2 cut(s) 265, 314
MvnI CGCG 2 cut(s) 19, 21
MwoI GCNNNNNNNGC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 263, 312
PspGI CCWGG 2 cut(s) 263, 312
PspPI GGNCC 1 cut(s) 310
SatI GCNGC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 265, 314
SduI GDGCHC 1 cut(s) 163
SetI ASST 2 cut(s) 27, 198
SfaNI GCATC 2 cut(s) 20, 165
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 2 cut(s) 41, 357
SsiI CCGC 5 cut(s) 81, 129, 209, 273, 366
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 263, 312
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 41, 357
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 2 cut(s) 163, 190
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspRI CASTG 2 cut(s) 163, 190
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.