Rw0G011040

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00479
OG0023115
Physical Location & Seq
Forward (+)
8076 .. 8543
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011040.1

Sequence Viewer

Length: 468 bp
ATGTCCGCCTCAAATGAGCAGTCAAATGCTTCTGTTTCCCTTGGAGTGAATACTGGTTTTGTGGGACAGCATCATCATGTAGCTCGGGGTGAAGGGACAAAGCATACTTCAGAGTATACACAAGTTAAACAAGATGAATTCGTTTGGGCAAGTAAGAAAAATAAAAACAAATCGGGACATAATGCTGTGAAAAAAGCTTCGCAAGTTGGTGACAAGCCCGTGTCTTCGATGCAAGAGTCTGAAAAACATAAACGAGGTGATAACGATGAGTTTTTACGGGTATTGTTTTGGCAATTTCACAATTTTCGCATGCTACTTGGAAGTGACTTGCTTCTGTTCAGTAATGAAAAATATGTTGCTGTTAGCCTGCATCTATGGGACATTTCCCGAGAGGTAAAAGTGAACTATTGTATACTTTTTCTTTTTCCCTCCTATTCTTTTGGCATTTTCATAACCATGGAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.69

Weight (kDa)

8.65

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDRF1_N PF23788 66 - 136 3e-08 EDRF1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023115)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005786.1_g000001 Rmu_sc0014039.1_g000008
rosa_samantha Rh5DG472500
rosa_wichuraiana Rw0G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 466
AccI GTMKAC 2 cut(s) 116, 412
AciI CCGC 1 cut(s) 6
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 93
AluBI AGCT 2 cut(s) 83, 197
AluI AGCT 2 cut(s) 83, 197
Ama87I CYCGRG 2 cut(s) 84, 387
ApoI RAATTY 1 cut(s) 137
ArsI GACNNNNNNTTYG 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 101, 221, 269
AvaI CYCGRG 2 cut(s) 84, 387
BbsI GAAGAC 1 cut(s) 216
BmeT110I CYCGRG 2 cut(s) 84, 387
BmsI GCATC 3 cut(s) 79, 219, 379
BpiI GAAGAC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 40, 456
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 40, 456
BseNI ACTGG 1 cut(s) 58
BsiHKCI CYCGRG 2 cut(s) 84, 387
BslFI GGGAC 4 cut(s) 78, 109, 189, 392
BsmFI GGGAC 4 cut(s) 78, 109, 189, 392
BsoBI CYCGRG 2 cut(s) 84, 387
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 40, 456
BssNAI GTATAC 2 cut(s) 117, 413
BssT1I CCWWGG 2 cut(s) 40, 456
Bst1107I GTATAC 2 cut(s) 117, 413
BstC8I GCNNGC 2 cut(s) 311, 368
BstDSI CCRYGG 1 cut(s) 456
BstNSI RCATGY 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 216
BstZ17I GTATAC 2 cut(s) 117, 413
BtgI CCRYGG 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 311, 368
CviAII CATG 3 cut(s) 77, 310, 457
CviJI RGCY 4 cut(s) 83, 197, 217, 366
CviKI_1 RGCY 4 cut(s) 83, 197, 217, 366
Eco130I CCWWGG 2 cut(s) 40, 456
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 2 cut(s) 84, 387
EcoRI GAATTC 1 cut(s) 137
EcoT14I CCWWGG 2 cut(s) 40, 456
ErhI CCWWGG 2 cut(s) 40, 456
FaeI CATG 3 cut(s) 80, 313, 460
FaqI GGGAC 4 cut(s) 78, 109, 189, 392
FatI CATG 3 cut(s) 76, 309, 456
FblI GTMKAC 2 cut(s) 116, 412
Hin1II CATG 3 cut(s) 80, 313, 460
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 1 cut(s) 236
HphI GGTGA 3 cut(s) 101, 221, 269
Hpy166II GTNNAC 3 cut(s) 117, 403, 413
Hpy188I TCNGA 2 cut(s) 112, 241
Hpy188III TCNNGA 2 cut(s) 174, 387
Hpy8I GTNNAC 3 cut(s) 117, 403, 413
HpyAV CCTTC 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 232, 370
Hsp92II CATG 3 cut(s) 80, 313, 460
LpnPI CCDG 2 cut(s) 39, 380
LweI GCATC 3 cut(s) 79, 219, 379
MaeIII GTNAC 2 cut(s) 209, 323
MboII GAAGA 1 cut(s) 216
MluCI AATT 3 cut(s) 137, 293, 301
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 4 cut(s) 19, 248, 385, 439
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 75, 455
NcoI CCATGG 1 cut(s) 456
NlaIII CATG 3 cut(s) 80, 313, 460
NmuCI GTSAC 2 cut(s) 209, 323
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PsiI TTATAA 1 cut(s) 466
RseI CAYNNNNRTG 2 cut(s) 75, 455
SaqAI TTAA 1 cut(s) 126
SchI GAGTC 1 cut(s) 245
SetI ASST 4 cut(s) 85, 199, 259, 396
SfaNI GCATC 3 cut(s) 79, 219, 379
SmiMI CAYNNNNRTG 2 cut(s) 75, 455
SphI GCATGC 1 cut(s) 313
Sse9I AATT 3 cut(s) 137, 293, 301
SsiI CCGC 1 cut(s) 6
StyI CCWWGG 2 cut(s) 40, 456
TaqI TCGA 1 cut(s) 227
TasI AATT 3 cut(s) 137, 293, 301
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 2 cut(s) 209, 323
Tsp45I GTSAC 2 cut(s) 209, 323
TspDTI ATGAA 3 cut(s) 150, 360, 439
XapI RAATTY 1 cut(s) 137
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 2 cut(s) 116, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.