Rmu_sc0014039.1_g000008

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014039.1
OG0023115
Physical Location & Seq
Reverse (-)
38253 .. 39483
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014039.1_g000008.1.cds

Sequence Viewer

Length: 879 bp
atggagaaatcggggtcgcgcgagctacgatgcgtagggaaattagaaatcgaaaggccaaagcccgtcggcttcctctgcggctcaatccctgttcccaccgacaaacccttccactcttttcactccgctctcattccctccccccaaacagtcagtgctcctcgttatcggatgcttcccactgagactgacctcaacagccctccgctcctctccagttttcccgataagattcttcccgtccattccggagataaagcctgggacggcggtgctgtcacatcaaatcttgctaggaaatgtgaggcccttgctgtttctggtttagttgagtatggagatgagattgatgtaattgctcccgctgacattctcaagcagatattcaaaatgccatattcaaaggctcggctttccattgcagttcagcggattgggcacacacttattcttaataccgggcctgatgttgaagagggagaaaagttgatcaggagacgtcaaaatcagtcaaaatgtcttgatcaatctttgtttttgaattttgccatgcattctgttcgaatggaagcttgtgattgcccaccaactcatcatgtcgcatcaaatgagcagtcaaatgcttctgttctccctggagtgaatactggttttgtgggacagcatcatcatgtagctcggggtgaagggacaaagcatacttcagagtatacacaagttaaacaagatgaattcgtttgggcaagtaagaaaaataaaaacaaatcgggacataatgctgtgaaaaaagcttcgcaagttggtgacaagcccgtgtcttcgatgcaagagtctgaaaaacataaacgaggtgataacgatgagtttttacggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.19

Weight (kDa)

8.66

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023115)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005786.1_g000001 Rmu_sc0014039.1_g000008
rosa_samantha Rh5DG472500
rosa_wichuraiana Rw0G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 505
AccBSI CCGCTC 2 cut(s) 131, 211
AccI GTMKAC 1 cut(s) 713
AccII CGCG 2 cut(s) 19, 21
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 6 cut(s) 81, 129, 209, 273, 366, 433
AcsI RAATTY 2 cut(s) 544, 734
AcuI CTGAAG 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 502
AgsI TTSAA 4 cut(s) 391, 405, 476, 544
AjnI CCWGG 2 cut(s) 263, 637
AluBI AGCT 4 cut(s) 25, 575, 680, 794
AluI AGCT 4 cut(s) 25, 575, 680, 794
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 182, 493
Ama87I CYCGRG 1 cut(s) 681
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 3 cut(s) 56, 309, 464
ApoI RAATTY 2 cut(s) 544, 734
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 310, 464
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 698, 818, 866
AsuII TTCGAA 1 cut(s) 565
AvaI CYCGRG 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 2 cut(s) 265, 639
BclI TGATCA 2 cut(s) 492, 526
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 182, 493
BfaI CTAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 3 cut(s) 265, 463, 639
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 2 cut(s) 310, 464
BmrFI CCNGG 3 cut(s) 265, 463, 639
BmsI GCATC 5 cut(s) 20, 165, 614, 676, 816
BpiI GAAGAC 1 cut(s) 813
BpmI CTGGAG 2 cut(s) 202, 660
Bpu14I TTCGAA 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 463
BsaHI GRCGYC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 264, 637
BsaWI WCCGGW 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 219, 655
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 2 cut(s) 265, 639
BseDI CCNNGG 2 cut(s) 264, 637
BseGI GGATG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 219, 655
BseRI GAGGAG 2 cut(s) 153, 203
BseSI GKGCMC 1 cut(s) 444
Bsh1236I CGCG 2 cut(s) 19, 21
BshFI GGCC 3 cut(s) 58, 311, 466
BsiHKAI GWGCWC 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 2 cut(s) 252, 462
BslFI GGGAC 4 cut(s) 281, 675, 706, 786
BsmAI GTCTC 2 cut(s) 182, 493
BsmBI CGTCTC 1 cut(s) 493
BsmFI GGGAC 4 cut(s) 281, 675, 706, 786
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 3 cut(s) 58, 311, 466
BsoBI CYCGRG 1 cut(s) 681
Bsp119I TTCGAA 1 cut(s) 565
Bsp1286I GDGCHC 2 cut(s) 163, 444
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 2 cut(s) 492, 526
BspACI CCGC 6 cut(s) 81, 129, 209, 273, 366, 433
BspANI GGCC 3 cut(s) 58, 311, 466
BspCNI CTCAG 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 2 cut(s) 19, 21
BspT104I TTCGAA 1 cut(s) 565
BsrBI CCGCTC 2 cut(s) 131, 211
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 2 cut(s) 219, 655
BssECI CCNNGG 2 cut(s) 264, 637
BssMI GATC 2 cut(s) 492, 526
BssNAI GTATAC 1 cut(s) 714
BssNI GRCGYC 1 cut(s) 502
Bst1107I GTATAC 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 265, 639
Bst4CI ACNGT 2 cut(s) 154, 876
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 502
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 19, 21
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 495, 529
BstMAI GTCTC 2 cut(s) 182, 493
BstMBI GATC 2 cut(s) 492, 526
BstMWI GCNNNNNNNGC 2 cut(s) 78, 439
BstNI CCWGG 2 cut(s) 265, 639
BstSCI CCNGG 3 cut(s) 263, 461, 637
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 2 cut(s) 19, 21
BstV2I GAAGAC 1 cut(s) 813
BstZ17I GTATAC 1 cut(s) 714
BsuRI GGCC 3 cut(s) 58, 311, 466
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 163, 183
Cac8I GCNNGC 1 cut(s) 23
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 310, 464
CviAII CATG 3 cut(s) 553, 599, 674
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 494, 528
DpnII GATC 2 cut(s) 492, 526
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 263, 637
EcoT22I ATGCAT 1 cut(s) 558
Esp3I CGTCTC 1 cut(s) 493
FaeI CATG 3 cut(s) 556, 602, 677
FaiI YATR 9 cut(s) 339, 400, 554, 600, 675, 702, 714, 777, 846
FaqI GGGAC 4 cut(s) 281, 675, 706, 786
FatI CATG 3 cut(s) 552, 598, 673
FauI CCCGC 1 cut(s) 373
FbaI TGATCA 2 cut(s) 492, 526
FblI GTMKAC 1 cut(s) 713
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 82
GsuI CTGGAG 2 cut(s) 202, 660
HaeIII GGCC 3 cut(s) 58, 311, 466
HapII CCGG 2 cut(s) 252, 462
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 3 cut(s) 556, 602, 677
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HindIII AAGCTT 2 cut(s) 573, 792
HinfI GANTC 2 cut(s) 235, 833
HpaII CCGG 2 cut(s) 252, 462
HphI GGTGA 3 cut(s) 698, 818, 866
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 3 cut(s) 174, 709, 838
Hpy188III TCNNGA 5 cut(s) 227, 252, 496, 524, 771
Hpy8I GTNNAC 1 cut(s) 714
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 121, 683
HpyCH4III ACNGT 2 cut(s) 154, 876
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 3 cut(s) 425, 556, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 439
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 502
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 3 cut(s) 556, 602, 677
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 251
Ksp22I TGATCA 2 cut(s) 492, 526
Kzo9I GATC 2 cut(s) 492, 526
LmnI GCTCC 3 cut(s) 166, 216, 367
LweI GCATC 5 cut(s) 20, 165, 614, 676, 816
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 280, 806
MalI GATC 2 cut(s) 494, 528
MbiI CCGCTC 2 cut(s) 131, 211
MboI GATC 2 cut(s) 492, 526
MboII GAAGA 3 cut(s) 230, 488, 813
MhlI GDGCHC 2 cut(s) 163, 444
MluCI AATT 4 cut(s) 41, 357, 544, 734
MlyI GAGTC 1 cut(s) 842
MnlI CCTC 9 cut(s) 86, 151, 174, 206, 216, 224, 301, 472, 845
Mph1103I ATGCAT 1 cut(s) 558
MroI TCCGGA 1 cut(s) 251
MseI TTAA 2 cut(s) 456, 723
MslI CAYNNNNRTG 1 cut(s) 672
MspA1I CMGCKG 2 cut(s) 368, 433
MspI CCGG 2 cut(s) 252, 462
MspR9I CCNGG 3 cut(s) 265, 463, 639
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 2 cut(s) 265, 639
MvnI CGCG 2 cut(s) 19, 21
MwoI GCNNNNNNNGC 2 cut(s) 78, 439
NciI CCSGG 1 cut(s) 463
NdeII GATC 2 cut(s) 492, 526
NlaIII CATG 3 cut(s) 556, 602, 677
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 2 cut(s) 280, 806
NsiI ATGCAT 1 cut(s) 558
NspV TTCGAA 1 cut(s) 565
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
Psp6I CCWGG 2 cut(s) 263, 637
PspGI CCWGG 2 cut(s) 263, 637
PspPI GGNCC 2 cut(s) 310, 464
RseI CAYNNNNRTG 1 cut(s) 672
SaqAI TTAA 2 cut(s) 456, 723
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 492, 526
Sau96I GGNCC 2 cut(s) 310, 464
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 3 cut(s) 265, 463, 639
SduI GDGCHC 2 cut(s) 163, 444
SetI ASST 7 cut(s) 27, 198, 505, 577, 682, 796, 856
SfaNI GCATC 5 cut(s) 20, 165, 614, 676, 816
SfuI TTCGAA 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 4 cut(s) 41, 357, 544, 734
SsiI CCGC 6 cut(s) 81, 129, 209, 273, 366, 433
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 263, 461, 637
TaaI ACNGT 2 cut(s) 154, 876
TaiI ACGT 1 cut(s) 505
TaqI TCGA 3 cut(s) 51, 565, 824
TasI AATT 4 cut(s) 41, 357, 544, 734
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 2 cut(s) 456, 723
Tru9I TTAA 2 cut(s) 456, 723
TscAI CASTG 2 cut(s) 163, 190
TseFI GTSAC 2 cut(s) 280, 806
Tsp45I GTSAC 2 cut(s) 280, 806
TspDTI ATGAA 1 cut(s) 747
TspRI CASTG 2 cut(s) 163, 190
XapI RAATTY 2 cut(s) 544, 734
XmiI GTMKAC 1 cut(s) 713
XspI CTAG 1 cut(s) 297
ZraI GACGTC 1 cut(s) 503
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.