Rmu_sc0005791.1_g000001

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005791.1
OG0023116
Physical Location & Seq
Reverse (-)
2 .. 408
407 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 407 bp
atgctggtttctcatgctgggacatccaatagaaggaactcggaagccgtcccttcaagtcttagcaaatccaaattgagatacacggttccaagtatgaatagttctgcagcacaaccaaattctagtagagagcggcacaggatgagttttgatggttcaagcaatcaatcattagatccagatgattggagatctcattccatgtacagagttccttctatggattcattaagtgagagttcattgattttcagctcctcggatgcaagttcttgtagcaccgtgagcaccacggactcctccagcaatgaagatttctctgagtacatatttggtcaagtaggaacaaatccgtacagccaattcaggcgttcatcagacgtggttgcaccttccttgtttcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-MYND

Protein Analysis

136

Amino Acids

14.88

Weight (kDa)

5.85

Isoelectric Point (pI)

73.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023116)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005791.1_g000001
rosa_roxburghii Rroxscaffold_2G00132320
rosa_rugosa Rorug02G0174200
rosa_samantha Rh2BG238700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 3 cut(s) 209, 329, 359
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 2 cut(s) 57, 162
AjiI CACGTC 1 cut(s) 385
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw21I GWGCWC 1 cut(s) 293
AlwI GGATC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 32
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 194
BisI GCNGC 2 cut(s) 111, 137
BlsI GCNGC 2 cut(s) 112, 138
BmgBI CACGTC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 261, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 261, 294
BseGI GGATG 3 cut(s) 23, 150, 271
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 2 cut(s) 250, 292
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 293
BslFI GGGAC 2 cut(s) 34, 35
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 34, 35
Bsp1286I GDGCHC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 178, 194
BspACI CCGC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 261, 294
BssMI GATC 2 cut(s) 178, 194
Bst4CI ACNGT 2 cut(s) 88, 286
BstAUI TGTACA 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 62, 324
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 23, 150, 271
BstKTI GATC 2 cut(s) 181, 197
BstMBI GATC 2 cut(s) 178, 194
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 178, 194
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 2 cut(s) 178, 194
BtgI CCRYGG 1 cut(s) 294
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 3 cut(s) 23, 150, 271
Csp6I GTAC 3 cut(s) 208, 328, 358
CviAII CATG 2 cut(s) 14, 205
CviJI RGCY 3 cut(s) 47, 258, 363
CviKI_1 RGCY 3 cut(s) 47, 258, 363
CviQI GTAC 3 cut(s) 208, 328, 358
DdeI CTNAG 2 cut(s) 62, 324
DpnI GATC 2 cut(s) 180, 196
DpnII GATC 2 cut(s) 178, 194
FaeI CATG 2 cut(s) 17, 208
FaiI YATR 5 cut(s) 15, 98, 206, 224, 332
FaqI GGGAC 2 cut(s) 34, 35
FatI CATG 2 cut(s) 13, 204
Fnu4HI GCNGC 2 cut(s) 111, 137
FokI GGATG 3 cut(s) 10, 157, 278
Fsp4HI GCNGC 2 cut(s) 111, 137
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 111, 137
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 289
Hin1II CATG 2 cut(s) 17, 208
HinfI GANTC 2 cut(s) 227, 299
Hpy188I TCNGA 4 cut(s) 43, 265, 325, 382
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 27, 63, 228, 405
HpyCH4III ACNGT 2 cut(s) 88, 286
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 3 cut(s) 110, 269, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 2 cut(s) 62, 324
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 2 cut(s) 17, 208
Kzo9I GATC 2 cut(s) 178, 194
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 5 cut(s) 3, 127, 195, 319, 355
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 384
MalI GATC 2 cut(s) 180, 196
MbiI CCGCTC 1 cut(s) 136
MboI GATC 2 cut(s) 178, 194
MboII GAAGA 1 cut(s) 326
MflI RGATCY 2 cut(s) 178, 194
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 3 cut(s) 74, 121, 365
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 2 cut(s) 271, 313
MseI TTAA 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 2 cut(s) 178, 194
NlaIII CATG 2 cut(s) 17, 208
NlaIV GGNNCC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 112, 138
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 90
PsrI GAACNNNNNNTAC 2 cut(s) 88, 120
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 178, 194
RsaI GTAC 3 cut(s) 209, 329, 359
RsaNI GTAC 3 cut(s) 208, 328, 358
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 2 cut(s) 111, 137
Sau3AI GATC 2 cut(s) 178, 194
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 293
SetI ASST 3 cut(s) 260, 387, 397
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 74, 121, 365
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 88, 286
TaiI ACGT 1 cut(s) 387
TasI AATT 3 cut(s) 74, 121, 365
TatI WGTACW 2 cut(s) 207, 327
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 5 cut(s) 113, 219, 234, 327, 366
TspGWI ACGGA 2 cut(s) 311, 345
XapI RAATTY 1 cut(s) 121
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.