Rorug02G0174200

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0023116
Physical Location & Seq
Reverse (-)
15943852 .. 15946891
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0174200.1

Sequence Viewer

Length: 804 bp
ATGTCTAATGAACGCATGGATTTTCAATTGGATGATGATGTCATCGCATCGCTGAATGACCGCGTCCAATATGATGATAGTGAAACTCAGGATGTAGGTCGTTTGTTTGTGAATGAACGAACAACAAGTCCCCAAAACAGAAATAGTGGAGCTAATGAGAGTAATAAGAAAAATACAAGAGGGAAAACCATTATTAAATGGGGTGTGAATGGAGTACGAGAAAGAGTTAAGTGGGGAAAATCTGGTGCACCAGTGTGGCCGAGGGATAAGTGTGCACACTACTCAAAATTCATTGGTAGTCTAGCGGCTGATTGTGGATATTACCCTATTGACGTCCAGGATTGGCGGCACTTTGAGGAGGATGTCCATAGCAAGGCATGGACACGTATTGAGGGGACAATTGATTGGACAGACCAAGCAACTTCCACTAAAAGATCCAAAATCAAGTCGTATGCATTTGAAAGACTTGCAGATCGCTGGAAGCAACACAAGTCAAATCTGAAAAAAGTGTTTTGGTTACCTAATCAAGGGACTGCTGACCGTTTTAGGTGCCCTTATGCTGCCATTGACAGAGATCAATGGGTAAGGTGGGTTTCTCACTTGGATGAAGAGGATACTCAGACCAAGGCTGCTATAAATGTTAGTAATCGCTCGCAACGGGTAATGCATCATAGTACTGGCACAAGAACCTTTCCAGCAGTTGTTTATGAATGGCAACTTGAGAATGGGGTTGAGGAGGAACCTGATAGGCTAGAAATATTCAAGTTGACACATCGTAAGAAGGGGAAAAAAATGAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-MYND

Protein Analysis

267

Amino Acids

31.23

Weight (kDa)

9.11

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 190 - 264 3e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023116)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005791.1_g000001
rosa_roxburghii Rroxscaffold_2G00132320
rosa_rugosa Rorug02G0174200
rosa_samantha Rh2BG238700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 549
AccII CGCG 1 cut(s) 63
AciI CCGC 3 cut(s) 61, 305, 346
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 2 cut(s) 216, 676
AfiI CCNNNNNNNGG 2 cut(s) 373, 527
AflIII ACRYGT 1 cut(s) 383
AgsI TTSAA 3 cut(s) 26, 461, 763
AjnI CCWGG 1 cut(s) 336
AleI CACNNNNGTG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw21I GWGCWC 2 cut(s) 250, 277
Alw44I GTGCAC 2 cut(s) 246, 273
AlwI GGATC 1 cut(s) 429
AoxI GGCC 1 cut(s) 257
ApaLI GTGCAC 2 cut(s) 246, 273
ApeKI GCWGC 2 cut(s) 560, 629
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
BaeGI GKGCMC 3 cut(s) 250, 277, 554
BanI GGYRCC 1 cut(s) 549
Bbv12I GWGCWC 2 cut(s) 250, 277
BbvI GCAGC 2 cut(s) 547, 616
BciT130I CCWGG 1 cut(s) 338
BciVI GTATCC 1 cut(s) 607
BfaI CTAG 2 cut(s) 302, 752
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 4 cut(s) 306, 347, 561, 630
BlsI GCNGC 4 cut(s) 307, 348, 562, 631
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 551, 741
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 56, 676
BpuEI CTTGAG 1 cut(s) 740
BsaAI YACGTR 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 260, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 527
Bse1I ACTGG 2 cut(s) 251, 682
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 260, 624
BseGI GGATG 4 cut(s) 37, 97, 367, 610
BseLI CCNNNNNNNGG 2 cut(s) 373, 527
BseMII CTCAG 2 cut(s) 101, 632
BseNI ACTGG 2 cut(s) 251, 682
BseRI GAGGAG 2 cut(s) 371, 749
BseSI GKGCMC 3 cut(s) 250, 277, 554
BseXI GCAGC 2 cut(s) 547, 616
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 549
BsiHKAI GWGCWC 2 cut(s) 250, 277
BslFI GGGAC 3 cut(s) 114, 409, 544
BslI CCNNNNNNNGG 2 cut(s) 373, 527
BsmFI GGGAC 3 cut(s) 114, 409, 544
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 3 cut(s) 250, 277, 554
Bsp143I GATC 3 cut(s) 434, 472, 574
BspACI CCGC 3 cut(s) 61, 305, 346
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 100, 631
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 551, 741
BspPI GGATC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 549
BsrI ACTGG 2 cut(s) 251, 682
BssECI CCNNGG 2 cut(s) 260, 624
BssMI GATC 3 cut(s) 434, 472, 574
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 603
BstACI GRCGYC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 2 cut(s) 87, 618
BstEII GGTNACC 1 cut(s) 516
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 4 cut(s) 37, 97, 367, 610
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 3 cut(s) 437, 475, 577
BstMBI GATC 3 cut(s) 434, 472, 574
BstNI CCWGG 1 cut(s) 338
BstPI GGTNACC 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 336
BstSLI GKGCMC 3 cut(s) 250, 277, 554
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 547, 616
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 1 cut(s) 259
BtgZI GCGATG 2 cut(s) 28, 33
BtsCI GGATG 4 cut(s) 37, 97, 367, 610
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 653
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 215, 675
CviAII CATG 2 cut(s) 16, 378
CviJI RGCY 5 cut(s) 152, 259, 308, 629, 751
CviKI_1 RGCY 5 cut(s) 152, 259, 308, 629, 751
CviQI GTAC 2 cut(s) 215, 675
DdeI CTNAG 2 cut(s) 87, 618
DpnI GATC 3 cut(s) 436, 474, 576
DpnII GATC 3 cut(s) 434, 472, 574
EaeI YGGCCR 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 624
Eco91I GGTNACC 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO65I GGTNACC 1 cut(s) 516
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 624
EcoT22I ATGCAT 2 cut(s) 457, 669
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 2 cut(s) 19, 381
FaqI GGGAC 3 cut(s) 114, 409, 544
FatI CATG 2 cut(s) 15, 377
Fnu4HI GCNGC 4 cut(s) 306, 347, 561, 630
FokI GGATG 4 cut(s) 44, 104, 374, 617
Fsp4HI GCNGC 4 cut(s) 306, 347, 561, 630
FspBI CTAG 2 cut(s) 302, 752
GluI GCNGC 4 cut(s) 306, 347, 561, 630
HaeIII GGCC 1 cut(s) 259
HgaI GACGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 2 cut(s) 19, 381
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
Hpy166II GTNNAC 3 cut(s) 248, 275, 768
Hpy188I TCNGA 2 cut(s) 501, 621
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 3 cut(s) 248, 275, 768
HpyAV CCTTC 1 cut(s) 775
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 2 cut(s) 333, 385
HpyCH4V TGCA 5 cut(s) 248, 275, 455, 470, 667
HpyF3I CTNAG 2 cut(s) 87, 618
HpySE526I ACGT 2 cut(s) 333, 385
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 2 cut(s) 19, 381
Kzo9I GATC 3 cut(s) 434, 472, 574
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 9 cut(s) 74, 228, 264, 323, 350, 463, 663, 708, 756
Lsp1109I GCAGC 2 cut(s) 547, 616
LweI GCATC 2 cut(s) 56, 676
MaeI CTAG 2 cut(s) 302, 752
MaeII ACGT 2 cut(s) 333, 385
MaeIII GTNAC 1 cut(s) 516
MalI GATC 3 cut(s) 436, 474, 576
MboI GATC 3 cut(s) 434, 472, 574
MboII GAAGA 1 cut(s) 620
MfeI CAATTG 2 cut(s) 26, 399
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 3 cut(s) 250, 277, 554
MluCI AATT 3 cut(s) 26, 287, 399
MnlI CCTC 8 cut(s) 173, 255, 349, 352, 385, 604, 727, 730
Mph1103I ATGCAT 2 cut(s) 457, 669
MseI TTAA 2 cut(s) 195, 228
MslI CAYNNNNRTG 2 cut(s) 253, 603
MspR9I CCNGG 1 cut(s) 338
MunI CAATTG 2 cut(s) 26, 399
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 63
NdeII GATC 3 cut(s) 434, 472, 574
NlaIII CATG 2 cut(s) 19, 381
NlaIV GGNNCC 2 cut(s) 551, 741
NmeAIII GCCGAG 1 cut(s) 285
NsiI ATGCAT 2 cut(s) 457, 669
OliI CACNNNNGTG 1 cut(s) 253
PflFI GACNNNGTC 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 4 cut(s) 307, 348, 562, 631
Ppu21I YACGTR 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 516
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 551, 741
PsuI RGATCY 1 cut(s) 434
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 2 cut(s) 216, 676
RsaNI GTAC 2 cut(s) 215, 675
RseI CAYNNNNRTG 2 cut(s) 253, 603
SaqAI TTAA 2 cut(s) 195, 228
SatI GCNGC 4 cut(s) 306, 347, 561, 630
Sau3AI GATC 3 cut(s) 434, 472, 574
ScaI AGTACT 1 cut(s) 676
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 3 cut(s) 250, 277, 554
SetI ASST 9 cut(s) 100, 154, 336, 388, 523, 551, 590, 692, 745
SfaNI GCATC 2 cut(s) 56, 676
SmiMI CAYNNNNRTG 2 cut(s) 253, 603
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 3 cut(s) 26, 287, 399
SsiI CCGC 3 cut(s) 61, 305, 346
SspI AATATT 1 cut(s) 759
SspMI CTAG 2 cut(s) 302, 752
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 2 cut(s) 336, 388
TasI AATT 3 cut(s) 26, 287, 399
TatI WGTACW 1 cut(s) 674
TauI GCSGC 2 cut(s) 308, 349
Tru1I TTAA 2 cut(s) 195, 228
Tru9I TTAA 2 cut(s) 195, 228
TscAI CASTG 1 cut(s) 258
TseI GCWGC 2 cut(s) 560, 629
TspDTI ATGAA 5 cut(s) 24, 129, 280, 621, 723
TspRI CASTG 1 cut(s) 258
Tth111I GACNNNGTC 1 cut(s) 62
VneI GTGCAC 2 cut(s) 246, 273
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 287
XspI CTAG 2 cut(s) 302, 752
ZraI GACGTC 1 cut(s) 334
ZrmI AGTACT 1 cut(s) 676
Zsp2I ATGCAT 2 cut(s) 457, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.