Rh2BG238700

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0023116
Physical Location & Seq
Reverse (-)
23792346 .. 23792768
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG238700.1

Sequence Viewer

Length: 423 bp
ATGAATAGTTCTGCAGCACAACCAAATTCTAGTAGAGAGCGGCACAGGATGAGTTTTGATGGTTCAAGCAATCAATCATTAGATCCAGATGATTGGAGATCTCATTCCATGTACAGAGTTCCTGCTATGGATTCATTAAGTGAGAGTTCATCGATTTTCAGCTCCTCGGATGCAAGTTCTTGTAGCACCGTGAGCACCACGGACTCCTCCAGCAATGAAGATTTCTCTGAGTACATATTTGGTCAAGTAGGAACAAATCCGTACAGCCAATTCAGGCGTTCATCAGACGTGGTTGCACCTTCCTTGTTTCCAAACTTTGATGTAGATATGAAAGGCCCTACAGAGGACTCAGAAGGCGGAGGAAATTCCACAATTTTGTGTAGTGACAGAAGTAGACATCGCAGGAAGTCAACCTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-MYND

Protein Analysis

140

Amino Acids

15.33

Weight (kDa)

4.82

Isoelectric Point (pI)

76.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023116)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005791.1_g000001
rosa_roxburghii Rroxscaffold_2G00132320
rosa_rugosa Rorug02G0174200
rosa_samantha Rh2BG238700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 394
AciI CCGC 2 cut(s) 40, 357
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 2 cut(s) 25, 364
AfaI GTAC 3 cut(s) 113, 233, 263
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 66
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 197
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 2 cut(s) 25, 364
AspS9I GGNCC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 53
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 2 cut(s) 12, 339
BglII AGATCT 1 cut(s) 98
BisI GCNGC 2 cut(s) 15, 41
BlsI GCNGC 2 cut(s) 16, 42
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 335
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 165, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 220
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 165, 198
BseGI GGATG 2 cut(s) 54, 175
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 219, 363
BseRI GAGGAG 2 cut(s) 154, 196
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 336
BshVI ATCGAT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 343
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 2 cut(s) 82, 98
BspACI CCGC 2 cut(s) 40, 357
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 220, 362
BspDI ATCGAT 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 165, 198
BssMI GATC 2 cut(s) 82, 98
Bst4CI ACNGT 1 cut(s) 190
BstAUI TGTACA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 228, 349, 415
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 54, 175
BstKTI GATC 2 cut(s) 85, 101
BstMBI GATC 2 cut(s) 82, 98
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSFI CTRYAG 2 cut(s) 12, 339
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 82, 98
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 2 cut(s) 82, 98
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 1 cut(s) 336
BsuTUI ATCGAT 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 383
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 54, 175
Cfr13I GGNCC 1 cut(s) 335
ClaI ATCGAT 1 cut(s) 152
Csp6I GTAC 3 cut(s) 112, 232, 262
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 162, 267, 336
CviKI_1 RGCY 3 cut(s) 162, 267, 336
CviQI GTAC 3 cut(s) 112, 232, 262
DdeI CTNAG 3 cut(s) 228, 349, 415
DpnI GATC 2 cut(s) 84, 100
DpnII GATC 2 cut(s) 82, 98
EciI GGCGGA 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 335
FaeI CATG 1 cut(s) 112
FaiI YATR 4 cut(s) 110, 128, 236, 329
FatI CATG 1 cut(s) 108
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 15, 41
FokI GGATG 2 cut(s) 61, 182
Fsp4HI GCNGC 2 cut(s) 15, 41
FspBI CTAG 1 cut(s) 30
GluI GCNGC 2 cut(s) 15, 41
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 1 cut(s) 112
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 3 cut(s) 131, 203, 347
Hpy166II GTNNAC 2 cut(s) 395, 411
Hpy188I TCNGA 5 cut(s) 169, 229, 286, 352, 418
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 395, 411
HpyAV CCTTC 2 cut(s) 309, 347
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 14, 173, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 3 cut(s) 228, 349, 415
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 2 cut(s) 82, 98
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 6 cut(s) 31, 99, 135, 223, 259, 388
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 84, 100
MbiI CCGCTC 1 cut(s) 40
MboI GATC 2 cut(s) 82, 98
MboII GAAGA 1 cut(s) 230
MflI RGATCY 2 cut(s) 82, 98
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 4 cut(s) 25, 269, 364, 372
MlyI GAGTC 2 cut(s) 197, 341
MnlI CCTC 4 cut(s) 175, 217, 337, 353
MseI TTAA 2 cut(s) 137, 421
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 2 cut(s) 82, 98
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 16, 42
PleI GAGTC 2 cut(s) 197, 341
PpsI GAGTC 2 cut(s) 197, 341
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 82, 98
RsaI GTAC 3 cut(s) 113, 233, 263
RsaNI GTAC 3 cut(s) 112, 232, 262
SaqAI TTAA 2 cut(s) 137, 421
SatI GCNGC 2 cut(s) 15, 41
Sau3AI GATC 2 cut(s) 82, 98
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 2 cut(s) 197, 341
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 164, 291, 301, 416
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 2 cut(s) 12, 339
Sse9I AATT 4 cut(s) 25, 269, 364, 372
SsiI CCGC 2 cut(s) 40, 357
SspMI CTAG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 152
TasI AATT 4 cut(s) 25, 269, 364, 372
TatI WGTACW 2 cut(s) 111, 231
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 137, 421
Tru9I TTAA 2 cut(s) 137, 421
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 6 cut(s) 17, 123, 138, 231, 270, 344
TspGWI ACGGA 2 cut(s) 215, 249
XapI RAATTY 2 cut(s) 25, 364
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.