Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005816.1

Orthogroup ID

OG0023118

Physical Location & Seq

Genomic Coordinates Forward (+)

74032 .. 74415

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgactttgaccaagtctgtggtttatgaggctttgaggattgaacctccggttctgtttcagtacgggaaggccaaggaggatatggtggtccatagccatgatgcagcatttgagatcaagaacagggaaatgatcttcggatatcagccgttcgccatgaaggatccgaagattttcgagaatccagaggagtttgtggggcataggtttgtaggagaaggtgagaaactgttgaagtatgtttattggtcaaatggtcgcgagactgatgatccaacggtggagaataagcagtgtgccgggaaggatttggtgttgcttgtgtctaggttaatgttggtagagttgtccttcggtatgacacttgtaccattgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

5.39

Isoelectric Point (pI)

22.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 83	2.9e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023118)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8119862.1_g000001 Rmu_sc0005816.1_g000024 Rmu_sc0009186.1_g000001 Rmu_sc0040694.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AclWI	GGATC	3 cut(s)	161, 174, 269
AfaI	GTAC	2 cut(s)	65, 372
AgsI	TTSAA	2 cut(s)	44, 238
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	161, 174, 269
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	91
BaeI	ACNNNNGTAYC	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	50, 303
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	117, 135, 166, 274
Bsp68I	TCGCGA	1 cut(s)	264
BspANI	GGCC	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	161, 174, 269
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	4 cut(s)	117, 135, 166, 274
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	234, 283
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	4 cut(s)	120, 138, 169, 277
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	4 cut(s)	117, 135, 166, 274
BstSCI	CCNGG	1 cut(s)	302
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
BtuMI	TCGCGA	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	64, 371
CviAII	CATG	2 cut(s)	101, 160
CviJI	RGCY	4 cut(s)	32, 74, 99, 151
CviKI_1	RGCY	4 cut(s)	32, 74, 99, 151
CviQI	GTAC	2 cut(s)	64, 371
DpnI	GATC	4 cut(s)	119, 137, 168, 276
DpnII	GATC	4 cut(s)	117, 135, 166, 274
Eco130I	CCWWGG	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	104, 163
FaiI	YATR	8 cut(s)	27, 86, 96, 102, 161, 207, 243, 362
FatI	CATG	2 cut(s)	100, 159
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	50, 303
Hin1II	CATG	2 cut(s)	104, 163
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	50, 303
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	143, 171
Hpy188III	TCNNGA	4 cut(s)	121, 181, 188, 263
HpyAV	CCTTC	5 cut(s)	64, 157, 215, 301, 364
HpyCH4III	ACNGT	2 cut(s)	234, 283
HpyCH4V	TGCA	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	104, 163
Kzo9I	GATC	4 cut(s)	117, 135, 166, 274
LpnPI	CCDG	4 cut(s)	63, 112, 201, 316
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	330
MalI	GATC	4 cut(s)	119, 137, 168, 276
MboI	GATC	4 cut(s)	117, 135, 166, 274
MboII	GAAGA	2 cut(s)	130, 184
MflI	RGATCY	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	22, 30, 57, 73, 184
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	99, 379
MspI	CCGG	2 cut(s)	50, 303
MspR9I	CCNGG	1 cut(s)	304
MvnI	CGCG	1 cut(s)	264
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	4 cut(s)	117, 135, 166, 274
NlaIII	CATG	2 cut(s)	104, 163
NlaIV	GGNNCC	1 cut(s)	168
NruI	TCGCGA	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	184
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	2 cut(s)	65, 372
RsaNI	GTAC	2 cut(s)	64, 371
RseI	CAYNNNNRTG	2 cut(s)	99, 379
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	4 cut(s)	117, 135, 166, 274
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	304
SetI	ASST	4 cut(s)	49, 212, 226, 335
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	2 cut(s)	99, 379
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	234, 283
TaqI	TCGA	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	302
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	302
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.