Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040694.1

Orthogroup ID

OG0023118

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 400

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040694.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 400 bp

tccttccgtcccattccaatacggaaaggctaaggaggatcttataatcgagagccatgacgccgcatttgagatcaaaaaaggagaaataatcttcgggtaccagaccattgcaactagggatggaaaaattttcaagaaccccgaggagtttgtcggtgacaggtttgtaggggagggcgagaagctgctgaagtacgtgtggtggtccaatggccccgagacggtgagtccagctgccgggaacaagcagtgcgccgggaaggatctggtggtgctcatgaaccgattaatgttggtcgagttcttccttcgttatgacacttttacgctcgacgttgggacgtttctgttaggaccgaaggtgacgttcaagactttgaccccagcttcgtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

5.89

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023118)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8119862.1_g000001 Rmu_sc0005816.1_g000024 Rmu_sc0009186.1_g000001 Rmu_sc0040694.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	46, 274
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	2 cut(s)	102, 198
AfiI	CCNNNNNNNGG	2 cut(s)	224, 240
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	137, 374
AhdI	GACNNNNNGTC	1 cut(s)	229
AluBI	AGCT	3 cut(s)	188, 237, 390
AluI	AGCT	3 cut(s)	188, 237, 390
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	46, 274
Ama87I	CYCGRG	2 cut(s)	144, 219
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	188, 237
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	3 cut(s)	51, 83, 374
AseI	ATTAAT	1 cut(s)	291
Asp718I	GGTACC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	208, 216, 357
AsuC2I	CCSGG	2 cut(s)	242, 260
AsuHPI	GGTGA	3 cut(s)	171, 239, 377
AvaI	CYCGRG	2 cut(s)	144, 219
AvaII	GGWCC	2 cut(s)	208, 357
BanI	GGYRCC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	175, 224
BccI	CCATC	1 cut(s)	117
BcnI	CCSGG	2 cut(s)	242, 260
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	118
BisI	GCNGC	3 cut(s)	64, 189, 238
BlsI	GCNGC	3 cut(s)	65, 190, 239
Bme1390I	CCNGG	2 cut(s)	242, 260
Bme18I	GGWCC	2 cut(s)	208, 357
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmeT110I	CYCGRG	2 cut(s)	144, 219
BmgT120I	GGNCC	3 cut(s)	208, 216, 357
BmiI	GGNNCC	2 cut(s)	102, 218
BmrFI	CCNGG	2 cut(s)	242, 260
Bpu10I	CCTNAGC	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	242, 260
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 240
Bse3DI	GCAATG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	224, 240
BseMI	GCAATG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	175, 224
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	217
BshNI	GGYRCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	2 cut(s)	144, 219
BsiSI	CCGG	2 cut(s)	241, 259
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	224, 240
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	2 cut(s)	144, 219
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	38, 73, 266
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	102, 218
BspPI	GGATC	2 cut(s)	46, 274
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	38, 73, 266
BssNI	GRCGYC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	41, 76, 269
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	3 cut(s)	38, 73, 266
BstSCI	CCNGG	2 cut(s)	240, 258
BstV1I	GCAGC	2 cut(s)	175, 224
BstX2I	RGATCY	2 cut(s)	38, 266
BstYI	RGATCY	2 cut(s)	38, 266
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	128
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	208, 216, 357
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	101, 197
CviAII	CATG	2 cut(s)	57, 281
CviJI	RGCY	6 cut(s)	30, 55, 188, 217, 237, 390
CviKI_1	RGCY	6 cut(s)	30, 55, 188, 217, 237, 390
CviQI	GTAC	2 cut(s)	101, 197
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	3 cut(s)	40, 75, 268
DpnII	GATC	3 cut(s)	38, 73, 266
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	208, 357
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	144, 219
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	2 cut(s)	60, 284
FaiI	YATR	4 cut(s)	45, 58, 282, 319
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	2 cut(s)	56, 280
Fnu4HI	GCNGC	3 cut(s)	64, 189, 238
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	64, 189, 238
FspBI	CTAG	1 cut(s)	118
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	3 cut(s)	64, 189, 238
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	2 cut(s)	241, 259
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	60, 284
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	2 cut(s)	241, 259
HphI	GGTGA	3 cut(s)	171, 239, 377
Hpy188III	TCNNGA	5 cut(s)	50, 137, 281, 374, 397
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	4 cut(s)	13, 257, 321, 356
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	4 cut(s)	199, 337, 345, 369
HpyCH4V	TGCA	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	4 cut(s)	199, 337, 345, 369
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	60, 284
HspAI	GCGC	1 cut(s)	256
KpnI	GGTACC	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	38, 73, 266
LpnPI	CCDG	6 cut(s)	117, 149, 247, 254, 255, 272
Lsp1109I	GCAGC	2 cut(s)	175, 224
MaeI	CTAG	1 cut(s)	118
MaeII	ACGT	4 cut(s)	199, 337, 345, 369
MaeIII	GTNAC	2 cut(s)	159, 365
MalI	GATC	3 cut(s)	40, 75, 268
MboI	GATC	3 cut(s)	38, 73, 266
MboII	GAAGA	2 cut(s)	86, 299
MflI	RGATCY	2 cut(s)	38, 266
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	3 cut(s)	29, 140, 170
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	2 cut(s)	241, 259
MspR9I	CCNGG	2 cut(s)	242, 260
NciI	CCSGG	2 cut(s)	242, 260
NdeII	GATC	3 cut(s)	38, 73, 266
NlaIII	CATG	2 cut(s)	60, 284
NlaIV	GGNNCC	2 cut(s)	102, 218
NmuCI	GTSAC	2 cut(s)	159, 365
PagI	TCATGA	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	65, 190, 239
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	102, 218
PspPI	GGNCC	3 cut(s)	208, 216, 357
PsuI	RGATCY	2 cut(s)	38, 266
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	102, 198
RsaNI	GTAC	2 cut(s)	101, 197
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	64, 189, 238
Sau3AI	GATC	3 cut(s)	38, 73, 266
Sau96I	GGNCC	3 cut(s)	208, 216, 357
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	242, 260
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	9 cut(s)	168, 190, 202, 239, 340, 348, 367, 372, 392
SinI	GGWCC	2 cut(s)	208, 357
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	240, 258
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	4 cut(s)	202, 340, 348, 372
TaqI	TCGA	3 cut(s)	49, 301, 334
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	159, 365
TseI	GCWGC	2 cut(s)	188, 237
Tsp45I	GTSAC	2 cut(s)	159, 365
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	2 cut(s)	208, 357
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	130
XspI	CTAG	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.