Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009186.1

Orthogroup ID

OG0023118

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 211

Gene Structure 211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009186.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 211 bp

gctgaagtacgtgtggtggtccaacggccccgagacggtgagtccagccgccggggacaagcagtgcgccgggaaggatctggtggtgctcatgaaccggataatgttagtcgagttcttccttcgttatgacacttttacgctcgacgtcggaacgtttttgttaggacccaaagtgacgttcaagactttgaccccagcttcgtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

69

Amino Acids

7.69

Weight (kDa)

8.1

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023118)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8119862.1_g000001 Rmu_sc0005816.1_g000024 Rmu_sc0009186.1_g000001 Rmu_sc0040694.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	151
AciI	CCGC	1 cut(s)	49
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	35, 51
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	185
AhdI	GACNNNNNGTC	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	26
ArsI	GACNNNNNNTTYG	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	3 cut(s)	19, 27, 168
AsuC2I	CCSGG	2 cut(s)	53, 71
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	2 cut(s)	19, 168
Bbv12I	GWGCWC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	2 cut(s)	53, 71
BcoDI	GTCTC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	53, 71
Bme18I	GGWCC	2 cut(s)	19, 168
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	3 cut(s)	19, 27, 168
BmiI	GGNNCC	2 cut(s)	29, 170
BmrFI	CCNGG	2 cut(s)	53, 71
BpuMI	CCSGG	2 cut(s)	53, 71
BsaAI	YACGTR	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 51
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	35, 51
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	52, 70, 98
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	35, 51
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	29, 170
BspPI	GGATC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	77
BssNI	GRCGYC	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	51, 69
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	3 cut(s)	19, 27, 168
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	3 cut(s)	28, 48, 201
CviKI_1	RGCY	3 cut(s)	28, 48, 201
CviQI	GTAC	1 cut(s)	8
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	19, 168
Eco57I	CTGAAG	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	1 cut(s)	95
FaiI	YATR	2 cut(s)	93, 130
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	3 cut(s)	52, 70, 98
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	3 cut(s)	52, 70, 98
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	92, 185, 208
Hpy99I	CGWCG	2 cut(s)	150, 153
HpyAV	CCTTC	2 cut(s)	68, 132
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	4 cut(s)	10, 148, 156, 180
HpySE526I	ACGT	4 cut(s)	10, 148, 156, 180
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	58, 65, 66, 83, 111
MaeII	ACGT	4 cut(s)	10, 148, 156, 180
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	1 cut(s)	110
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	46, 131
MspI	CCGG	3 cut(s)	52, 70, 98
MspR9I	CCNGG	2 cut(s)	53, 71
NciI	CCSGG	2 cut(s)	53, 71
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	29, 170
NmuCI	GTSAC	1 cut(s)	176
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	29, 170
PspPI	GGNCC	3 cut(s)	19, 27, 168
PspPPI	RGGWCCY	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	3 cut(s)	19, 27, 168
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	53, 71
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	5 cut(s)	13, 151, 159, 183, 203
SinI	GGWCC	2 cut(s)	19, 168
SsiI	CCGC	1 cut(s)	49
StyD4I	CCNGG	2 cut(s)	51, 69
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	4 cut(s)	13, 151, 159, 183
TaqI	TCGA	2 cut(s)	112, 145
TauI	GCSGC	1 cut(s)	51
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	19, 168
ZraI	GACGTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.