Rmu_sc0005821.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005821.1
OG0025574
Physical Location & Seq
Reverse (-)
21245 .. 23328
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005821.1_g000005.1.cds

Sequence Viewer

Length: 609 bp
atgctgaactggtccatgagcctggcaatcctgacaacctgtcgcgaacgtgatacagtctttcaagatgctgggccaataatacccatgccgcctgatgagccaacgcatcttcggacccgcctgatgggctccatacacgccgttcatctaacctccacagcggtacccacgagcttccgctcacgagttttctactcacgagcttccgctcacgccttcgcggtacctccgagcttccgctcacgagctttcctttcacgccttcccggcaacccccgagcttccgctcacgagttttctactcacgagcttccgctcacgagttttctactcacgagcttccgctcacgccttcgcggcacccccgagcttccgctcatgagctttccactcacgagcttaccgctcacgccttcccggcaacccacgagcttccgctcacgccttcccggcaactcacgagctcaccgctcacgccttcccggcaacccacgagcttccgctcacaagcttaccgctaacgccttcccggcaactcacgagcttaccgctcacgccttcccggcaacccacgagcttctgctcacaccttcgcggcacccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.4

Weight (kDa)

11.84

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025574)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003977.1_g000014 Rmu_sc0004275.1_g000017 Rmu_sc0005821.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 166, 226
AccB1I GGYRCC 4 cut(s) 166, 226, 362, 600
AccII CGCG 4 cut(s) 45, 224, 360, 598
AfaI GTAC 2 cut(s) 168, 228
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 65
AhdI GACNNNNNGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 469
Ama87I CYCGRG 2 cut(s) 279, 368
AoxI GGCC 1 cut(s) 74
Asp718I GGTACC 2 cut(s) 166, 226
AspS9I GGNCC 3 cut(s) 12, 74, 117
AsuC2I CCSGG 6 cut(s) 270, 421, 453, 486, 533, 566
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 2 cut(s) 279, 368
AvaII GGWCC 2 cut(s) 12, 117
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
BanI GGYRCC 4 cut(s) 166, 226, 362, 600
BanII GRGCYC 2 cut(s) 134, 469
Bbv12I GWGCWC 1 cut(s) 469
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 6 cut(s) 270, 421, 453, 486, 533, 566
BglI GCCNNNNNGGC 8 cut(s) 129, 270, 360, 421, 453, 486, 533, 566
BisI GCNGC 3 cut(s) 92, 361, 599
BlsI GCNGC 3 cut(s) 93, 362, 600
Bme1390I CCNGG 7 cut(s) 23, 270, 421, 453, 486, 533, 566
Bme18I GGWCC 2 cut(s) 12, 117
BmeRI GACNNNNNGTC 1 cut(s) 39
BmeT110I CYCGRG 2 cut(s) 279, 368
BmgT120I GGNCC 3 cut(s) 12, 74, 117
BmiI GGNNCC 6 cut(s) 119, 133, 168, 228, 364, 602
BmrFI CCNGG 7 cut(s) 23, 270, 421, 453, 486, 533, 566
BmsI GCATC 2 cut(s) 58, 118
BpuMI CCSGG 6 cut(s) 270, 421, 453, 486, 533, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 14
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 4 cut(s) 45, 224, 360, 598
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 4 cut(s) 166, 226, 362, 600
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 2 cut(s) 279, 368
BsiSI CCGG 6 cut(s) 270, 421, 453, 486, 533, 566
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 2 cut(s) 279, 368
Bsp1286I GDGCHC 2 cut(s) 134, 469
Bsp68I TCGCGA 1 cut(s) 45
BspANI GGCC 1 cut(s) 76
BspFNI CGCG 4 cut(s) 45, 224, 360, 598
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 6 cut(s) 119, 133, 168, 228, 364, 602
BspT107I GGYRCC 4 cut(s) 166, 226, 362, 600
BsrI ACTGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 58
BstFNI CGCG 4 cut(s) 45, 224, 360, 598
BstMWI GCNNNNNNNGC 9 cut(s) 100, 129, 270, 360, 421, 453, 486, 533, 566
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 7 cut(s) 21, 268, 419, 451, 484, 531, 564
BstUI CGCG 4 cut(s) 45, 224, 360, 598
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 76
BtuMI TCGCGA 1 cut(s) 45
CciI TCATGA 1 cut(s) 381
Cfr13I GGNCC 3 cut(s) 12, 74, 117
Csp6I GTAC 2 cut(s) 167, 227
CviAII CATG 3 cut(s) 16, 88, 382
CviQI GTAC 2 cut(s) 167, 227
DriI GACNNNNNGTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 467
Eco24I GRGCYC 2 cut(s) 134, 469
Eco47I GGWCC 2 cut(s) 12, 117
Eco53kI GAGCTC 1 cut(s) 467
Eco88I CYCGRG 2 cut(s) 279, 368
EcoICRI GAGCTC 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 134, 469
FaeI CATG 3 cut(s) 19, 91, 385
FaiI YATR 4 cut(s) 17, 89, 137, 383
FatI CATG 3 cut(s) 15, 87, 381
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 92, 361, 599
FriOI GRGCYC 2 cut(s) 134, 469
Fsp4HI GCNGC 3 cut(s) 92, 361, 599
GluI GCNGC 3 cut(s) 92, 361, 599
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 76
HapII CCGG 6 cut(s) 270, 421, 453, 486, 533, 566
Hin1II CATG 3 cut(s) 19, 91, 385
HindIII AAGCTT 1 cut(s) 512
HpaII CCGG 6 cut(s) 270, 421, 453, 486, 533, 566
HphI GGTGA 1 cut(s) 461
Hpy188I TCNGA 2 cut(s) 117, 234
HpyAV CCTTC 9 cut(s) 229, 275, 365, 426, 458, 491, 538, 571, 603
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 9 cut(s) 100, 129, 270, 360, 421, 453, 486, 533, 566
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 3 cut(s) 19, 91, 385
KpnI GGTACC 2 cut(s) 170, 230
LmnI GCTCC 1 cut(s) 137
LweI GCATC 2 cut(s) 58, 118
MaeII ACGT 1 cut(s) 49
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 134, 469
MnlI CCTC 2 cut(s) 166, 240
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 6 cut(s) 270, 421, 453, 486, 533, 566
MspR9I CCNGG 7 cut(s) 23, 270, 421, 453, 486, 533, 566
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 4 cut(s) 45, 224, 360, 598
MwoI GCNNNNNNNGC 9 cut(s) 100, 129, 270, 360, 421, 453, 486, 533, 566
NciI CCSGG 6 cut(s) 270, 421, 453, 486, 533, 566
NlaIII CATG 3 cut(s) 19, 91, 385
NlaIV GGNNCC 6 cut(s) 119, 133, 168, 228, 364, 602
NruI TCGCGA 1 cut(s) 45
PagI TCATGA 1 cut(s) 381
PkrI GCNGC 3 cut(s) 93, 362, 600
Psp124BI GAGCTC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 6 cut(s) 119, 133, 168, 228, 364, 602
PspPI GGNCC 3 cut(s) 12, 74, 117
RruI TCGCGA 1 cut(s) 45
RsaI GTAC 2 cut(s) 168, 228
RsaNI GTAC 2 cut(s) 167, 227
SacI GAGCTC 1 cut(s) 469
SatI GCNGC 3 cut(s) 92, 361, 599
Sau96I GGNCC 3 cut(s) 12, 74, 117
ScrFI CCNGG 7 cut(s) 23, 270, 421, 453, 486, 533, 566
SduI GDGCHC 2 cut(s) 134, 469
SfaNI GCATC 2 cut(s) 58, 118
SinI GGWCC 2 cut(s) 12, 117
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 7 cut(s) 21, 268, 419, 451, 484, 531, 564
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 52
TauI GCSGC 3 cut(s) 94, 363, 601
TspDTI ATGAA 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 12, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.