Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005956.1

Orthogroup ID

OG0020436

Physical Location & Seq

Genomic Coordinates Reverse (-)

89338 .. 92549

Gene Structure 3212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005956.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtccggcagagtaattgcatgggaaaaatatgcctggttgaaatgggaaatatttctgcaaaaccttagtgattactcagctcgtgcatataaaattcctgagtgcagccgcacagcagctggtacaccactggttcaggtccctggtgatgagctgaaatgggtccgttgctgcataaatgatgaccttgtagcgatggcatccctaaacggaatggtcatcttatgttcgtctgatattattcgagccctaggcaggaacactaggggttctgtagccatgcgacttaaagaaggcgataagatggcaagcgtagacattataccagcagctatgcggaaagacttggagacgatctgttgggtttatgtcgttttcactgctctatttcaattttccgcggaggaccgattggcagcagtttttgtggttggattctctgtggcagaggatggtgaaagtgatgaactagtggtcctagtaagccaaagtggtactgtgaatagaattaaggtgcgggacatctcaatacagtctcgctatgcaagggctgttattttgatgcgactcgatcttgctggaaagattcagtctgcttcattaatatcagcaacagatgaggtgccagagattgaagttgatgatgaagctgcaattcatggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0009295 GO:0009507 GO:0009536 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseA_C DNA_topoisoIV

Protein Analysis

222

Amino Acids

24.48

Weight (kDa)

4.96

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020436)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g04210
rosa_chinensis	RchiOBHm_Chr1g0331311
rosa_multiflora	Rmu_sc0005956.1_g000014 Rmu_sc0005956.1_g000017 Rmu_sc0011261.1_g000004
rosa_samantha	Rh1AG117400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	404
AciI	CCGC	5 cut(s)	112, 340, 402, 404, 520
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	2 cut(s)	127, 499
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	43, 395, 638
AhlI	ACTAGT	1 cut(s)	472
AjnI	CCWGG	2 cut(s)	35, 145
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
AluBI	AGCT	5 cut(s)	83, 122, 157, 335, 653
AluI	AGCT	5 cut(s)	83, 122, 157, 335, 653
Alw26I	GTCTC	2 cut(s)	347, 543
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	6 cut(s)	108, 119, 174, 332, 419, 653
ApoI	RAATTY	1 cut(s)	96
AseI	ATTAAT	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	54
AspA2I	CCTAGG	1 cut(s)	253
AspS9I	GGNCC	4 cut(s)	142, 166, 409, 478
AsuHPI	GGTGA	2 cut(s)	161, 470
AvaII	GGWCC	4 cut(s)	142, 166, 409, 478
AvrII	CCTAGG	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	84
BbvI	GCAGC	6 cut(s)	120, 131, 161, 344, 431, 640
BccI	CCATC	3 cut(s)	193, 301, 449
BciT130I	CCWGG	2 cut(s)	37, 147
BcoDI	GTCTC	2 cut(s)	347, 543
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	4 cut(s)	254, 267, 473, 482
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	7 cut(s)	109, 112, 120, 175, 333, 420, 654
BlnI	CCTAGG	1 cut(s)	253
BlsI	GCNGC	7 cut(s)	110, 113, 121, 176, 334, 421, 655
Bme1390I	CCNGG	2 cut(s)	37, 147
Bme18I	GGWCC	4 cut(s)	142, 166, 409, 478
BmgT120I	GGNCC	4 cut(s)	142, 166, 409, 478
BmiI	GGNNCC	3 cut(s)	144, 167, 627
BmrFI	CCNGG	2 cut(s)	37, 147
BmsI	GCATC	2 cut(s)	212, 555
BsaJI	CCNNGG	3 cut(s)	145, 253, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	37, 147
BseDI	CCNNGG	3 cut(s)	145, 253, 402
BseGI	GGATG	2 cut(s)	203, 460
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	93, 93
BseNI	ACTGG	1 cut(s)	138
BseXI	GCAGC	6 cut(s)	120, 131, 161, 344, 431, 640
BsgI	GTGCAG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	128, 536
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	347, 543
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	128, 536
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	357, 574
BspACI	CCGC	5 cut(s)	112, 340, 402, 404, 520
BspCNI	CTCAG	2 cut(s)	92, 94
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	3 cut(s)	144, 167, 627
BspT107I	GGYRCC	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	145, 253, 402
BssMI	GATC	2 cut(s)	357, 574
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	37, 147
Bst4CI	ACNGT	2 cut(s)	502, 537
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	68, 79, 102
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	203, 460
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	360, 577
BstMAI	GTCTC	2 cut(s)	347, 543
BstMBI	GATC	2 cut(s)	357, 574
BstNI	CCWGG	2 cut(s)	37, 147
BstSCI	CCNGG	2 cut(s)	35, 145
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	6 cut(s)	120, 131, 161, 344, 431, 640
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	203, 460
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	131, 381
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	142, 166, 409, 478
Cfr42I	CCGCGG	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	126, 498
CviAII	CATG	3 cut(s)	21, 283, 662
CviQI	GTAC	2 cut(s)	126, 498
DdeI	CTNAG	3 cut(s)	68, 79, 102
DpnI	GATC	2 cut(s)	359, 576
DpnII	GATC	2 cut(s)	357, 574
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	4 cut(s)	142, 166, 409, 478
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	35, 145
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	3 cut(s)	24, 286, 665
FaqI	GGGAC	2 cut(s)	128, 536
FatI	CATG	3 cut(s)	20, 282, 661
FauI	CCCGC	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	7 cut(s)	109, 112, 120, 175, 333, 420, 654
FokI	GGATG	2 cut(s)	190, 467
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	7 cut(s)	109, 112, 120, 175, 333, 420, 654
FspBI	CTAG	4 cut(s)	254, 267, 473, 482
GluI	GCNGC	7 cut(s)	109, 112, 120, 175, 333, 420, 654
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	3 cut(s)	24, 286, 665
HinfI	GANTC	3 cut(s)	438, 570, 589
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	161, 470
Hpy166II	GTNNAC	2 cut(s)	128, 319
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	2 cut(s)	128, 319
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	502, 537
HpyCH4V	TGCA	7 cut(s)	20, 61, 89, 108, 177, 548, 656
HpyF3I	CTNAG	3 cut(s)	68, 79, 102
Hsp92II	CATG	3 cut(s)	24, 286, 665
KspI	CCGCGG	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	357, 574
Lsp1109I	GCAGC	6 cut(s)	120, 131, 161, 344, 431, 640
LweI	GCATC	2 cut(s)	212, 555
MaeI	CTAG	4 cut(s)	254, 267, 473, 482
MalI	GATC	2 cut(s)	359, 576
MboI	GATC	2 cut(s)	357, 574
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	5 cut(s)	15, 96, 395, 510, 657
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	3 cut(s)	400, 445, 616
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	4 cut(s)	291, 513, 605, 667
MspA1I	CMGCKG	2 cut(s)	122, 404
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	37, 147
MvaI	CCWGG	2 cut(s)	37, 147
MvnI	CGCG	1 cut(s)	404
NdeII	GATC	2 cut(s)	357, 574
NlaIII	CATG	3 cut(s)	24, 286, 665
NlaIV	GGNNCC	3 cut(s)	144, 167, 627
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	438, 589
PkrI	GCNGC	7 cut(s)	110, 113, 121, 176, 334, 421, 655
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
PpuMI	RGGWCCY	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	35, 145
PspGI	CCWGG	2 cut(s)	35, 145
PspN4I	GGNNCC	3 cut(s)	144, 167, 627
PspPI	GGNCC	4 cut(s)	142, 166, 409, 478
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	127, 499
RsaNI	GTAC	2 cut(s)	126, 498
SacII	CCGCGG	1 cut(s)	405
SaqAI	TTAA	4 cut(s)	291, 513, 605, 667
SatI	GCNGC	7 cut(s)	109, 112, 120, 175, 333, 420, 654
Sau3AI	GATC	2 cut(s)	357, 574
Sau96I	GGNCC	4 cut(s)	142, 166, 409, 478
SchI	GAGTC	1 cut(s)	564
ScrFI	CCNGG	2 cut(s)	37, 147
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	212, 555
SfcI	CTRYAG	1 cut(s)	276
Sfr303I	CCGCGG	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	405
SinI	GGWCC	4 cut(s)	142, 166, 409, 478
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	5 cut(s)	15, 96, 395, 510, 657
SsiI	CCGC	5 cut(s)	112, 340, 402, 404, 520
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	4 cut(s)	254, 267, 473, 482
StyD4I	CCNGG	2 cut(s)	35, 145
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	502, 537
TaqI	TCGA	2 cut(s)	247, 573
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	5 cut(s)	15, 96, 395, 510, 657
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	438, 589
Tru1I	TTAA	4 cut(s)	291, 513, 605, 667
Tru9I	TTAA	4 cut(s)	291, 513, 605, 667
TscAI	CASTG	2 cut(s)	138, 388
TseI	GCWGC	6 cut(s)	108, 119, 174, 332, 419, 653
TspDTI	ATGAA	4 cut(s)	483, 591, 650, 663
TspGWI	ACGGA	2 cut(s)	158, 228
TspRI	CASTG	2 cut(s)	138, 388
VpaK11BI	GGWCC	4 cut(s)	142, 166, 409, 478
VspI	ATTAAT	1 cut(s)	605
XapI	RAATTY	1 cut(s)	96
XmaJI	CCTAGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	4 cut(s)	254, 267, 473, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.