Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011261.1

Orthogroup ID

OG0020436

Physical Location & Seq

Genomic Coordinates Reverse (-)

6740 .. 9716

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011261.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgtccggcagagtaattgcatgggaaaaatatgcctggttgaaatgggaaatatttctgcaaaaccttagtgattactcagctcgtgcatataaaattcctgagtgcagccgcacagcagctggtacgccactggttcagatcttatctctgtcagatggcgagagaattacatctgttattcctgtgagtgagtttgctggagatcagtttttactaatgcttacagtgaatggctacataaagaaggtgtctttgagttctttttcatcaatcaggtcgaccggaatcatagcaattcaactggtccctggtgatgagctgaaatgggtccgttgctgcacaaatgatgaccttgtagcgatggcatccctaaacggaatggtcatcttatgttcgtctgatattattcgagccctaggcaggaacactcggggttctgtagccatgcgacttaaagaaggcgataagatggcaagcgtagatattataccagcagctatgtggaaagacttggagagggtgtcagaagcaccagaaagcacggctagaagtctgaaaggcccgtggttgttgtttgtgtctgagaatggatatggaaagcgtgttcccttgagcagatttcactcttcccgtctgaacagagtgggtctgataggttacaagatctgttgggtttatgtcgttttcactgctctatttcaattttccgcggaggaccgattggcagcagtttttgtggttggattctctgtggcagaggatggtgaaagtgatgaacaagtggtcctagtaagccaaagtggtactgtgaatagaattaaggtgcgggatatctcaatacagtctcgctatgcaaggggtgttattttgatgcgactcgatcttgctggaaagattcagtctgcttcattaatatcagcaacagatgaggtgccagagattgaagttgatgatgaagctgcaattcatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0009295 GO:0009507 GO:0009536 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseA_C DNA_topoisoIV

Protein Analysis

325

Amino Acids

35.8

Weight (kDa)

6.23

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020436)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g04210
rosa_chinensis	RchiOBHm_Chr1g0331311
rosa_multiflora	Rmu_sc0005956.1_g000014 Rmu_sc0005956.1_g000017 Rmu_sc0011261.1_g000004
rosa_samantha	Rh1AG117400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	934
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	713
AciI	CCGC	4 cut(s)	112, 711, 713, 829
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	2 cut(s)	127, 808
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	43, 302, 704, 947
AjnI	CCWGG	2 cut(s)	35, 310
AloI	GAACNNNNNNTCC	4 cut(s)	591, 623, 771, 803
AluBI	AGCT	5 cut(s)	83, 122, 322, 500, 962
AluI	AGCT	5 cut(s)	83, 122, 322, 500, 962
Alw26I	GTCTC	1 cut(s)	852
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	6 cut(s)	108, 119, 339, 497, 728, 962
ApoI	RAATTY	1 cut(s)	96
AseI	ATTAAT	1 cut(s)	914
Asp700I	GAANNNNTTC	1 cut(s)	54
AspA2I	CCTAGG	1 cut(s)	418
AspS9I	GGNCC	5 cut(s)	307, 331, 563, 718, 787
AsuHPI	GGTGA	2 cut(s)	326, 779
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	4 cut(s)	307, 331, 718, 787
AvrII	CCTAGG	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	84
BbvI	GCAGC	6 cut(s)	120, 131, 326, 509, 740, 949
BccI	CCATC	4 cut(s)	152, 358, 466, 758
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	2 cut(s)	37, 312
BcoDI	GTCTC	1 cut(s)	852
BfaI	CTAG	3 cut(s)	419, 549, 791
BfmI	CTRYAG	1 cut(s)	441
BglII	AGATCT	2 cut(s)	141, 666
BisI	GCNGC	7 cut(s)	109, 112, 120, 340, 498, 729, 963
BlnI	CCTAGG	1 cut(s)	418
BlsI	GCNGC	7 cut(s)	110, 113, 121, 341, 499, 730, 964
Bme1390I	CCNGG	2 cut(s)	37, 312
Bme18I	GGWCC	4 cut(s)	307, 331, 718, 787
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	5 cut(s)	307, 331, 563, 718, 787
BmiI	GGNNCC	3 cut(s)	309, 332, 936
BmrFI	CCNGG	2 cut(s)	37, 312
BmsI	GCATC	2 cut(s)	377, 864
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	634
BsaJI	CCNNGG	4 cut(s)	310, 418, 566, 711
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	2 cut(s)	138, 309
BseBI	CCWGG	2 cut(s)	37, 312
BseDI	CCNNGG	4 cut(s)	310, 418, 566, 711
BseGI	GGATG	2 cut(s)	368, 769
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	93, 93, 576
BseNI	ACTGG	2 cut(s)	138, 309
BseXI	GCAGC	6 cut(s)	120, 131, 326, 509, 740, 949
BsgI	GTGCAG	2 cut(s)	127, 325
Bsh1236I	CGCG	1 cut(s)	713
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	1 cut(s)	934
BsiEI	CGRYCG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	6, 285
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	852
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	141, 205, 666, 883
BspACI	CCGC	4 cut(s)	112, 711, 713, 829
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	3 cut(s)	92, 94, 577
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	3 cut(s)	309, 332, 936
BspT107I	GGYRCC	1 cut(s)	934
BsrI	ACTGG	2 cut(s)	138, 309
BssECI	CCNNGG	4 cut(s)	310, 418, 566, 711
BssMI	GATC	4 cut(s)	141, 205, 666, 883
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	37, 312
Bst4CI	ACNGT	3 cut(s)	229, 811, 846
Bst6I	CTCTTC	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	4 cut(s)	68, 79, 102, 585
BstDSI	CCRYGG	2 cut(s)	566, 711
BstF5I	GGATG	2 cut(s)	368, 769
BstFNI	CGCG	1 cut(s)	713
BstKTI	GATC	4 cut(s)	144, 208, 669, 886
BstMAI	GTCTC	1 cut(s)	852
BstMBI	GATC	4 cut(s)	141, 205, 666, 883
BstMCI	CGRYCG	1 cut(s)	285
BstNI	CCWGG	2 cut(s)	37, 312
BstSCI	CCNGG	2 cut(s)	35, 310
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	6 cut(s)	120, 131, 326, 509, 740, 949
BstX2I	RGATCY	2 cut(s)	141, 666
BstYI	RGATCY	2 cut(s)	141, 666
BsuRI	GGCC	1 cut(s)	564
BtgI	CCRYGG	2 cut(s)	566, 711
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	368, 769
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	131, 234, 690
Cac8I	GCNNGC	1 cut(s)	478
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	5 cut(s)	307, 331, 563, 718, 787
Cfr42I	CCGCGG	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	126, 807
CviAII	CATG	3 cut(s)	21, 448, 971
CviQI	GTAC	2 cut(s)	126, 807
DdeI	CTNAG	4 cut(s)	68, 79, 102, 585
DpnI	GATC	4 cut(s)	143, 207, 668, 885
DpnII	GATC	4 cut(s)	141, 205, 666, 883
Eam1104I	CTCTTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	4 cut(s)	307, 331, 718, 787
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	35, 310
EcoRV	GATATC	1 cut(s)	835
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	24, 451, 974
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	3 cut(s)	20, 447, 970
FauI	CCCGC	1 cut(s)	822
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	7 cut(s)	109, 112, 120, 340, 498, 729, 963
FokI	GGATG	2 cut(s)	355, 776
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	7 cut(s)	109, 112, 120, 340, 498, 729, 963
FspBI	CTAG	3 cut(s)	419, 549, 791
GluI	GCNGC	7 cut(s)	109, 112, 120, 340, 498, 729, 963
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	2 cut(s)	6, 285
Hin1II	CATG	3 cut(s)	24, 451, 974
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	4 cut(s)	288, 747, 879, 898
HpaII	CCGG	2 cut(s)	6, 285
HphI	GGTGA	2 cut(s)	326, 779
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	8 cut(s)	141, 157, 403, 529, 558, 586, 639, 654
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	241, 455
HpyCH4III	ACNGT	3 cut(s)	229, 811, 846
HpyCH4V	TGCA	7 cut(s)	20, 61, 89, 108, 342, 857, 965
HpyF3I	CTNAG	4 cut(s)	68, 79, 102, 585
Hsp92II	CATG	3 cut(s)	24, 451, 974
KspI	CCGCGG	1 cut(s)	714
Kzo9I	GATC	4 cut(s)	141, 205, 666, 883
Lsp1109I	GCAGC	6 cut(s)	120, 131, 326, 509, 740, 949
LweI	GCATC	2 cut(s)	377, 864
MaeI	CTAG	3 cut(s)	419, 549, 791
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	4 cut(s)	143, 207, 668, 885
MboI	GATC	4 cut(s)	141, 205, 666, 883
MboII	GAAGA	1 cut(s)	621
MflI	RGATCY	2 cut(s)	141, 666
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	7 cut(s)	15, 96, 168, 297, 704, 819, 966
MlyI	GAGTC	1 cut(s)	873
MmeI	TCCRAC	1 cut(s)	724
MnlI	CCTC	4 cut(s)	513, 709, 754, 925
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	3 cut(s)	456, 822, 914
MspA1I	CMGCKG	2 cut(s)	122, 713
MspI	CCGG	2 cut(s)	6, 285
MspR9I	CCNGG	2 cut(s)	37, 312
MvaI	CCWGG	2 cut(s)	37, 312
MvnI	CGCG	1 cut(s)	713
NdeII	GATC	4 cut(s)	141, 205, 666, 883
NlaIII	CATG	3 cut(s)	24, 451, 974
NlaIV	GGNNCC	3 cut(s)	309, 332, 936
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	288, 747, 898
PkrI	GCNGC	7 cut(s)	110, 113, 121, 341, 499, 730, 964
PleI	GAGTC	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	873
PshBI	ATTAAT	1 cut(s)	914
Psp6I	CCWGG	2 cut(s)	35, 310
PspGI	CCWGG	2 cut(s)	35, 310
PspN4I	GGNNCC	3 cut(s)	309, 332, 936
PspPI	GGNCC	5 cut(s)	307, 331, 563, 718, 787
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	141, 666
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	127, 808
RsaNI	GTAC	2 cut(s)	126, 807
SacII	CCGCGG	1 cut(s)	714
SalI	GTCGAC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	456, 822, 914
SatI	GCNGC	7 cut(s)	109, 112, 120, 340, 498, 729, 963
Sau3AI	GATC	4 cut(s)	141, 205, 666, 883
Sau96I	GGNCC	5 cut(s)	307, 331, 563, 718, 787
SchI	GAGTC	1 cut(s)	873
ScrFI	CCNGG	2 cut(s)	37, 312
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	377, 864
SfcI	CTRYAG	1 cut(s)	441
Sfr303I	CCGCGG	1 cut(s)	714
SgrBI	CCGCGG	1 cut(s)	714
SinI	GGWCC	4 cut(s)	307, 331, 718, 787
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	7 cut(s)	15, 96, 168, 297, 704, 819, 966
SsiI	CCGC	4 cut(s)	112, 711, 713, 829
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	3 cut(s)	419, 549, 791
StyD4I	CCNGG	2 cut(s)	35, 310
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	3 cut(s)	229, 811, 846
TaqI	TCGA	3 cut(s)	281, 412, 882
TaqII	GACCGA	1 cut(s)	735
TasI	AATT	7 cut(s)	15, 96, 168, 297, 704, 819, 966
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	288, 747, 898
Tru1I	TTAA	3 cut(s)	456, 822, 914
Tru9I	TTAA	3 cut(s)	456, 822, 914
TscAI	CASTG	3 cut(s)	138, 234, 697
TseI	GCWGC	6 cut(s)	108, 119, 339, 497, 728, 962
TspDTI	ATGAA	5 cut(s)	258, 792, 900, 959, 972
TspGWI	ACGGA	2 cut(s)	323, 393
TspRI	CASTG	3 cut(s)	138, 234, 697
VpaK11BI	GGWCC	4 cut(s)	307, 331, 718, 787
VspI	ATTAAT	1 cut(s)	914
XapI	RAATTY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	3 cut(s)	419, 549, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.