Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005956.1

Orthogroup ID

OG0020436

Physical Location & Seq

Genomic Coordinates Reverse (-)

107217 .. 110228

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgtccggcagagtaattgcatgggaaaaatatgcctggttgaaatgggaaatatttctgcaaaaccttagtgattactcagctcgtgcatataaaattcctgagtgcagccgcacagcagctggtacgccactggttcagatcttatctctgtcagatggcgagagaattacatctgttattcctgtgagtgagtttgctggagatcagtttttactaatgcttacagtgaatggctacataaagaaggtgtctttgagttctttttcatcaatcaggtcgaccggaatcatagcaattcaactggtccctggtgatgagctgaaatgggtccgttgctgcacaaatgatgaccttgtagcgatggcatccctaaacggaatggtcatcttatgttcgtctgatattattcgagccctaggcaggaacactcggggttctgtagccatgcgacttaaagaaggcgataagatggcaagcgtagatattataccagcagctatgtggaaagacttggagagggtgtcagaagcaccagaaagcacggctagaagtctgaaaggcccgtggttgttgtttgtgtctgagaatggatatggaaagcgtgttcccttgagcagatttcactcttcccgtctgaacagagtgggtctgataggttacaagttttctgcagaggaccgattggcagcagtttttgtggttggattctctgtggcagaggatggtgaaagtgatgaacaagtggtcctagtaagccaaagtggtactgtgaatagaattaaggtgcgggatatctcaatacagtctcgctatgcaaggggtgttattttgatgcgactcgatcttgctggaaagattcagtctgcttcattaatatcagcaacagatgaggtgccagagattgaagttgaacatagactgcagtggaagtcattttggtcgcattgtcaacctcgtcatcatctcttgacgatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0009295 GO:0009507 GO:0009536 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseA_C DNA_topoisoIV

Protein Analysis

326

Amino Acids

36.24

Weight (kDa)

8.76

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_gyraseA_C	PF03989	71 - 114	9.7e-09	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	118 - 164	9.8e-08	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	190 - 235	2.3e-06	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	248 - 293	6.6e-07	DNA gyrase C-terminal domain, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020436)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g04210
rosa_chinensis	RchiOBHm_Chr1g0331311
rosa_multiflora	Rmu_sc0005956.1_g000014 Rmu_sc0005956.1_g000017 Rmu_sc0011261.1_g000004
rosa_samantha	Rh1AG117400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	895
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	2 cut(s)	112, 790
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	2 cut(s)	127, 769
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	43, 302, 908, 914
AjnI	CCWGG	2 cut(s)	35, 310
AloI	GAACNNNNNNTCC	4 cut(s)	591, 623, 732, 764
AluBI	AGCT	4 cut(s)	83, 122, 322, 500
AluI	AGCT	4 cut(s)	83, 122, 322, 500
Alw26I	GTCTC	1 cut(s)	813
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	5 cut(s)	108, 119, 339, 497, 689
ApoI	RAATTY	1 cut(s)	96
AseI	ATTAAT	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	54
AspA2I	CCTAGG	1 cut(s)	418
AspS9I	GGNCC	5 cut(s)	307, 331, 563, 679, 748
AsuHPI	GGTGA	2 cut(s)	326, 740
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	4 cut(s)	307, 331, 679, 748
AvrII	CCTAGG	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	84
BbvI	GCAGC	5 cut(s)	120, 131, 326, 509, 701
BccI	CCATC	4 cut(s)	152, 358, 466, 719
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	2 cut(s)	37, 312
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	3 cut(s)	419, 549, 752
BfmI	CTRYAG	3 cut(s)	441, 672, 923
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	6 cut(s)	109, 112, 120, 340, 498, 690
BlnI	CCTAGG	1 cut(s)	418
BlsI	GCNGC	6 cut(s)	110, 113, 121, 341, 499, 691
Bme1390I	CCNGG	2 cut(s)	37, 312
Bme18I	GGWCC	4 cut(s)	307, 331, 679, 748
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	5 cut(s)	307, 331, 563, 679, 748
BmiI	GGNNCC	3 cut(s)	309, 332, 897
BmrFI	CCNGG	2 cut(s)	37, 312
BmsI	GCATC	2 cut(s)	377, 825
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	634
BsaJI	CCNNGG	3 cut(s)	310, 418, 566
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	2 cut(s)	138, 309
BseBI	CCWGG	2 cut(s)	37, 312
BseDI	CCNNGG	3 cut(s)	310, 418, 566
BseGI	GGATG	2 cut(s)	368, 730
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	93, 93, 576
BseNI	ACTGG	2 cut(s)	138, 309
BseXI	GCAGC	5 cut(s)	120, 131, 326, 509, 701
BsgI	GTGCAG	2 cut(s)	127, 325
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	1 cut(s)	895
BsiEI	CGRYCG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	6, 285
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	813
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	141, 205, 844
BspACI	CCGC	2 cut(s)	112, 790
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	3 cut(s)	92, 94, 577
BspLI	GGNNCC	3 cut(s)	309, 332, 897
BspMAI	CTGCAG	2 cut(s)	676, 927
BspT107I	GGYRCC	1 cut(s)	895
BsrI	ACTGG	2 cut(s)	138, 309
BssECI	CCNNGG	3 cut(s)	310, 418, 566
BssMI	GATC	3 cut(s)	141, 205, 844
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	37, 312
Bst4CI	ACNGT	3 cut(s)	229, 772, 807
Bst6I	CTCTTC	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	4 cut(s)	68, 79, 102, 585
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	368, 730
BstKTI	GATC	3 cut(s)	144, 208, 847
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	3 cut(s)	141, 205, 844
BstMCI	CGRYCG	1 cut(s)	285
BstNI	CCWGG	2 cut(s)	37, 312
BstSCI	CCNGG	2 cut(s)	35, 310
BstSFI	CTRYAG	3 cut(s)	441, 672, 923
BstV1I	GCAGC	5 cut(s)	120, 131, 326, 509, 701
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	566
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	368, 730
BtsI	GCAGTG	1 cut(s)	932
BtsIMutI	CAGTG	3 cut(s)	131, 234, 932
Cac8I	GCNNGC	1 cut(s)	478
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	5 cut(s)	307, 331, 563, 679, 748
Csp6I	GTAC	2 cut(s)	126, 768
CviAII	CATG	2 cut(s)	21, 448
CviQI	GTAC	2 cut(s)	126, 768
DdeI	CTNAG	4 cut(s)	68, 79, 102, 585
DpnI	GATC	3 cut(s)	143, 207, 846
DpnII	GATC	3 cut(s)	141, 205, 844
Eam1104I	CTCTTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	796
Eco47I	GGWCC	4 cut(s)	307, 331, 679, 748
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	35, 310
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	2 cut(s)	24, 451
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	20, 447
FauI	CCCGC	1 cut(s)	783
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	6 cut(s)	109, 112, 120, 340, 498, 690
FokI	GGATG	2 cut(s)	355, 737
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	6 cut(s)	109, 112, 120, 340, 498, 690
FspBI	CTAG	3 cut(s)	419, 549, 752
GluI	GCNGC	6 cut(s)	109, 112, 120, 340, 498, 690
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	2 cut(s)	6, 285
Hin1II	CATG	2 cut(s)	24, 451
HincII	GTYRAC	2 cut(s)	282, 953
HindII	GTYRAC	2 cut(s)	282, 953
HinfI	GANTC	4 cut(s)	288, 708, 840, 859
HpaII	CCGG	2 cut(s)	6, 285
HphI	GGTGA	2 cut(s)	326, 740
Hpy166II	GTNNAC	2 cut(s)	282, 953
Hpy188I	TCNGA	8 cut(s)	141, 157, 403, 529, 558, 586, 639, 654
Hpy188III	TCNNGA	2 cut(s)	101, 970
Hpy8I	GTNNAC	2 cut(s)	282, 953
HpyAV	CCTTC	2 cut(s)	241, 455
HpyCH4III	ACNGT	3 cut(s)	229, 772, 807
HpyCH4V	TGCA	8 cut(s)	20, 61, 89, 108, 342, 674, 818, 925
HpyF3I	CTNAG	4 cut(s)	68, 79, 102, 585
Hsp92II	CATG	2 cut(s)	24, 451
Kzo9I	GATC	3 cut(s)	141, 205, 844
Lsp1109I	GCAGC	5 cut(s)	120, 131, 326, 509, 701
LweI	GCATC	2 cut(s)	377, 825
MaeI	CTAG	3 cut(s)	419, 549, 752
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	3 cut(s)	143, 207, 846
MboI	GATC	3 cut(s)	141, 205, 844
MboII	GAAGA	1 cut(s)	621
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	5 cut(s)	15, 96, 168, 297, 780
MlyI	GAGTC	1 cut(s)	834
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	5 cut(s)	513, 670, 715, 886, 966
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	3 cut(s)	456, 783, 875
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	6, 285
MspR9I	CCNGG	2 cut(s)	37, 312
MvaI	CCWGG	2 cut(s)	37, 312
NdeII	GATC	3 cut(s)	141, 205, 844
NlaIII	CATG	2 cut(s)	24, 451
NlaIV	GGNNCC	3 cut(s)	309, 332, 897
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	288, 708, 859
PkrI	GCNGC	6 cut(s)	110, 113, 121, 341, 499, 691
PleI	GAGTC	1 cut(s)	834
PpsI	GAGTC	1 cut(s)	834
PshBI	ATTAAT	1 cut(s)	875
Psp6I	CCWGG	2 cut(s)	35, 310
PspGI	CCWGG	2 cut(s)	35, 310
PspN4I	GGNNCC	3 cut(s)	309, 332, 897
PspPI	GGNCC	5 cut(s)	307, 331, 563, 679, 748
PstI	CTGCAG	2 cut(s)	676, 927
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	127, 769
RsaNI	GTAC	2 cut(s)	126, 768
SalI	GTCGAC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	456, 783, 875
SatI	GCNGC	6 cut(s)	109, 112, 120, 340, 498, 690
Sau3AI	GATC	3 cut(s)	141, 205, 844
Sau96I	GGNCC	5 cut(s)	307, 331, 563, 679, 748
SchI	GAGTC	1 cut(s)	834
ScrFI	CCNGG	2 cut(s)	37, 312
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	377, 825
SfcI	CTRYAG	3 cut(s)	441, 672, 923
SinI	GGWCC	4 cut(s)	307, 331, 679, 748
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	5 cut(s)	15, 96, 168, 297, 780
SsiI	CCGC	2 cut(s)	112, 790
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	3 cut(s)	419, 549, 752
StyD4I	CCNGG	2 cut(s)	35, 310
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	3 cut(s)	229, 772, 807
TaqI	TCGA	3 cut(s)	281, 412, 843
TaqII	GACCGA	1 cut(s)	696
TasI	AATT	5 cut(s)	15, 96, 168, 297, 780
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	288, 708, 859
Tru1I	TTAA	3 cut(s)	456, 783, 875
Tru9I	TTAA	3 cut(s)	456, 783, 875
TscAI	CASTG	3 cut(s)	138, 234, 932
TseI	GCWGC	5 cut(s)	108, 119, 339, 497, 689
TspDTI	ATGAA	3 cut(s)	258, 753, 861
TspGWI	ACGGA	2 cut(s)	323, 393
TspRI	CASTG	3 cut(s)	138, 234, 932
VpaK11BI	GGWCC	4 cut(s)	307, 331, 679, 748
VspI	ATTAAT	1 cut(s)	875
XapI	RAATTY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	3 cut(s)	419, 549, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.