Rmu_sc0006153.1_g000053

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006153.1
OG0023121
Physical Location & Seq
Reverse (-)
180944 .. 181459
516 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
atgaacatgaaaacgaggttggacaacgccattggtaatatctttttatgggcttcggcacagctagatctaaatgatacagcaccagggagcagtgatcttaagttgtgtgacttggttaacttgctcaatgaatctatcaaagaatttaacagtgattacttggagactttgaagggtaaagagggatatggaggcatgtgtgatttactagatttcatggaagaggggagttctatagaacctgcaccagagttttattcattctcaagctggactagattttttgaccaagttgattttggatgggggaggccatcttgggttggagtctcggggagggttggaaatagaaattttacaacattcgttgaaacacaatgcgatggcggaattgaagcgtgggtaactctaaatgaaaaacaaatggctaggctagaacaagatccacagtttttagcatttgcatctccaaacccccgaatttcaatagcctcttcagttggtattgattaa

Protein Analysis

171

Amino Acids

19.06

Weight (kDa)

4.32

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 35 - 152 1.8e-11 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023121)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006153.1_g000053
rosa_samantha Rh2AG147300 Rh2BG152500 Rh2DG152700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AciI CCGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 3 cut(s) 146, 355, 483
AcuI CTGAAG 1 cut(s) 483
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 4 cut(s) 175, 374, 398, 489
AjnI CCWGG 1 cut(s) 85
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 64, 273
AluI AGCT 2 cut(s) 64, 273
Alw26I GTCTC 2 cut(s) 161, 337
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 1 cut(s) 314
ApoI RAATTY 3 cut(s) 146, 355, 483
AvaI CYCGRG 1 cut(s) 334
BccI CCATC 3 cut(s) 300, 325, 380
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 161, 337
BfaI CTAG 5 cut(s) 65, 212, 279, 432, 437
BfmI CTRYAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 253
BglII AGATCT 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 87
BmeT110I CYCGRG 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 161, 337
BsnI GGCC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 334
Bsp143I GATC 3 cut(s) 67, 97, 445
BspACI CCGC 1 cut(s) 390
BspANI GGCC 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 1 cut(s) 440
BspTI CTTAAG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 3 cut(s) 67, 97, 445
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 155, 453
Bst6I CTCTTC 2 cut(s) 219, 502
BstAFI CTTAAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 311
BstKTI GATC 3 cut(s) 70, 100, 448
BstMAI GTCTC 2 cut(s) 161, 337
BstMBI GATC 3 cut(s) 67, 97, 445
BstNI CCWGG 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 67, 445
BstYI RGATCY 2 cut(s) 67, 445
BsuRI GGCC 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 100, 160
BveI ACCTGC 1 cut(s) 253
CviAII CATG 3 cut(s) 7, 199, 220
CviJI RGCY 7 cut(s) 53, 64, 273, 316, 431, 436, 494
CviKI_1 RGCY 7 cut(s) 53, 64, 273, 316, 431, 436, 494
DpnI GATC 3 cut(s) 69, 99, 447
DpnII GATC 3 cut(s) 67, 97, 445
Eam1104I CTCTTC 2 cut(s) 219, 502
EarI CTCTTC 2 cut(s) 219, 502
EciI GGCGGA 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 3 cut(s) 10, 202, 223
FaiI YATR 6 cut(s) 8, 49, 192, 200, 221, 239
FatI CATG 3 cut(s) 6, 198, 219
FokI GGATG 1 cut(s) 318
FspBI CTAG 5 cut(s) 65, 212, 279, 432, 437
HaeIII GGCC 1 cut(s) 316
Hin1II CATG 3 cut(s) 10, 202, 223
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 2 cut(s) 134, 330
HpaI GTTAAC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 155, 453
HpyCH4V TGCA 2 cut(s) 248, 467
Hsp92II CATG 3 cut(s) 10, 202, 223
KspAI GTTAAC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 67, 97, 445
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 72, 99, 258, 259, 264
LweI GCATC 1 cut(s) 476
MaeI CTAG 5 cut(s) 65, 212, 279, 432, 437
MaeIII GTNAC 2 cut(s) 110, 406
MalI GATC 3 cut(s) 69, 99, 447
MboI GATC 3 cut(s) 67, 97, 445
MboII GAAGA 2 cut(s) 236, 489
MflI RGATCY 2 cut(s) 67, 445
MluCI AATT 4 cut(s) 146, 355, 393, 483
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 307, 325
MnlI CCTC 7 cut(s) 9, 178, 188, 220, 306, 333, 505
MseI TTAA 4 cut(s) 102, 120, 150, 514
MspCI CTTAAG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 3 cut(s) 67, 97, 445
NlaIII CATG 3 cut(s) 10, 202, 223
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 202
PfeI GAWTC 1 cut(s) 134
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 67, 445
SaqAI TTAA 4 cut(s) 102, 120, 150, 514
Sau3AI GATC 3 cut(s) 67, 97, 445
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 87
SetI ASST 4 cut(s) 20, 66, 247, 275
SfaNI GCATC 1 cut(s) 476
SfcI CTRYAG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 101, 268
SmoI CTYRAG 2 cut(s) 101, 268
Sse9I AATT 4 cut(s) 146, 355, 393, 483
SsiI CCGC 1 cut(s) 390
SspMI CTAG 5 cut(s) 65, 212, 279, 432, 437
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 155, 453
TasI AATT 4 cut(s) 146, 355, 393, 483
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 4 cut(s) 102, 120, 150, 514
Tru9I TTAA 4 cut(s) 102, 120, 150, 514
TscAI CASTG 2 cut(s) 100, 160
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 6 cut(s) 17, 23, 147, 208, 252, 432
TspRI CASTG 2 cut(s) 100, 160
Vha464I CTTAAG 1 cut(s) 101
XapI RAATTY 3 cut(s) 146, 355, 483
XceI RCATGY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 5 cut(s) 65, 212, 279, 432, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.